Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CLD04_RS04995 Genome accession   NZ_CP023257
Coordinates   952878..953672 (+) Length   264 a.a.
NCBI ID   WP_041332784.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 947878..958672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS04965 (CLD04_04965) sxzA 948717..949748 (+) 1032 WP_095843590.1 iron ABC transporter permease -
  CLD04_RS04970 (CLD04_04970) yfhB 949863..950744 (+) 882 WP_041332789.1 PhzF family phenazine biosynthesis isomerase -
  CLD04_RS04975 (CLD04_04975) yfhC 950832..951416 (+) 585 WP_003243940.1 nitroreductase -
  CLD04_RS04980 (CLD04_04980) yfhD 951455..951646 (-) 192 WP_003233561.1 YfhD family protein -
  CLD04_RS04985 (CLD04_04985) yfhE 951713..951823 (-) 111 WP_003223230.1 YfhE family protein -
  CLD04_RS04990 (CLD04_04990) yfhF 951878..952789 (-) 912 WP_095843591.1 TIGR01777 family oxidoreductase -
  CLD04_RS04995 (CLD04_04995) recX 952878..953672 (+) 795 WP_041332784.1 recombination regulator RecX Regulator
  CLD04_RS05000 (CLD04_05000) yfhH 953674..953988 (+) 315 WP_003244592.1 YfhH family protein -
  CLD04_RS05005 (CLD04_05005) yfhI 954131..955324 (+) 1194 WP_072692836.1 MFS transporter -
  CLD04_RS05010 (CLD04_05010) sspK 955356..955508 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  CLD04_RS05015 (CLD04_05015) yfhJ 955633..955902 (+) 270 WP_003243789.1 YfhJ family protein -
  CLD04_RS05020 (CLD04_05020) - 956013..957167 (+) 1155 Protein_941 IS3 family transposase -
  CLD04_RS05025 (CLD04_05025) yfhK 957341..957859 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  CLD04_RS05030 (CLD04_05030) spdL 957944..958276 (+) 333 WP_024573182.1 SdpC immunity protein SpdL -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31057.24 Da        Isoelectric Point: 6.6686

>NTDB_id=245521 CLD04_RS04995 WP_041332784.1 952878..953672(+) (recX) [Bacillus subtilis strain TLO3]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFASAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELRQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=245521 CLD04_RS04995 WP_041332784.1 952878..953672(+) (recX) [Bacillus subtilis strain TLO3]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCTCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAGGATCAGACAAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAACTTTCGACGAAAGAACTCAGACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992

Multiple sequence alignment