Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY95_RS16740 Genome accession   NZ_CP028734
Coordinates   3432629..3433234 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A42     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3427629..3438234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY95_RS16720 (AOY95_17665) aes 3427770..3428729 (+) 960 WP_001524183.1 acetyl esterase -
  AOY95_RS16725 (AOY95_17670) hemH 3428726..3429688 (-) 963 WP_001250114.1 ferrochelatase -
  AOY95_RS16730 (AOY95_17675) adk 3429820..3430464 (-) 645 WP_001313630.1 adenylate kinase -
  AOY95_RS16735 (AOY95_17685) htpG 3430645..3432519 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY95_RS16740 (AOY95_17690) recR 3432629..3433234 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY95_RS16745 (AOY95_17695) ybaB 3433234..3433563 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  AOY95_RS16750 (AOY95_17700) dnaX 3433616..3435547 (-) 1932 WP_021575927.1 DNA polymerase III subunit gamma/tau -
  AOY95_RS16755 (AOY95_17705) apt 3435676..3436227 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY95_RS16760 (AOY95_17715) ybaN 3436380..3436757 (-) 378 WP_001188900.1 DUF454 family protein -
  AOY95_RS16765 (AOY95_17720) priC 3436827..3437354 (+) 528 WP_001526709.1 primosomal replication protein N'' -
  AOY95_RS16770 (AOY95_17725) rsmS 3437368..3437529 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY95_RS22940 - 3437582..3437680 (-) 99 Protein_3294 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=245507 AOY95_RS16740 WP_001195025.1 3432629..3433234(-) (recR) [Escherichia coli strain A42]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=245507 AOY95_RS16740 WP_001195025.1 3432629..3433234(-) (recR) [Escherichia coli strain A42]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGTGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443