Detailed information NTG0245499

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: CLH39_RS04760
• Genome accession: NZ_CP023256
• Coordinates: 1073866..1074891 (+)
• Length: 341 a.a.
• NCBI ID: WP_306459881.1
• Uniprot ID: -
• Organism: Alcaligenes faecalis strain c16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1068866..1079891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLH39_RS04740 (CLH39_04740)	-	1071390..1071782 (+)	393	WP_081055438.1	MOSC N-terminal beta barrel domain-containing protein	-
CLH39_RS04745 (CLH39_04745)	-	1071846..1072103 (-)	258	WP_009454772.1	YfhL family 4Fe-4S dicluster ferredoxin	-
CLH39_RS04750 (CLH39_04750)	coaD	1072189..1072695 (-)	507	WP_009454773.1	pantetheine-phosphate adenylyltransferase	-
CLH39_RS04755 (CLH39_04755)	rsmD	1072716..1073345 (-)	630	WP_009454775.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
CLH39_RS04760 (CLH39_04760)	pilA	1073866..1074891 (+)	1026	WP_306459881.1	signal recognition particle-docking protein FtsY	Machinery gene
CLH39_RS04765 (CLH39_04765)	-	1075033..1076562 (-)	1530	WP_022983223.1	CYTH and CHAD domain-containing protein	-
CLH39_RS04770 (CLH39_04770)	-	1076682..1077509 (-)	828	WP_022983222.1	IclR family transcriptional regulator	-
CLH39_RS04775 (CLH39_04775)	ribBA	1077625..1078791 (+)	1167	WP_009454780.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
CLH39_RS04780 (CLH39_04780)	ribH	1078806..1079324 (+)	519	WP_009454781.1	6,7-dimethyl-8-ribityllumazine synthase	-
CLH39_RS04785 (CLH39_04785)	nusB	1079278..1079793 (+)	516	WP_042488795.1	transcription antitermination factor NusB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 35836.29 Da
• Isoelectric Point: 5.4568

>NTDB_id=245499 CLH39_RS04760 WP_306459881.1 1073866..1074891(+) (pilA) [Alcaligenes faecalis strain c16]
MQPTPEPEPEIVPVPAPQPDPAPAPTPEPEAAAPVVKTSWMARLKQGLSRTGQSLSSLFVGAKVDETLFEELEDALLMAD
AGVEATEKLITALRARVRKEKISDAAQVKQALCDILTDHLKPLEKSFPLESSKPLVVMIAGVNGAGKTTSIGKLAHTFQE
QGAKVLLAAGDTFRAAAREQLIEWGTRNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMVDTAGRLPTQLHLMEELKKI
KRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVAACAQGVRPIPVYWIGVGEG
MQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1026 bp

>NTDB_id=245499 CLH39_RS04760 WP_306459881.1 1073866..1074891(+) (pilA) [Alcaligenes faecalis strain c16]
ATACAGCCGACTCCTGAACCGGAGCCAGAGATTGTTCCAGTTCCTGCGCCACAGCCTGACCCAGCACCTGCCCCGACGCC
AGAGCCAGAAGCCGCCGCACCTGTGGTGAAAACTTCCTGGATGGCGCGCTTGAAACAGGGCTTGTCGCGTACCGGTCAGA
GCTTGAGCAGTCTGTTCGTCGGTGCCAAGGTTGATGAAACGCTGTTCGAGGAACTGGAAGACGCCTTGCTGATGGCAGAC
GCTGGTGTTGAGGCTACCGAGAAACTGATTACCGCTTTGCGTGCTCGTGTTCGTAAGGAAAAAATCAGCGATGCAGCCCA
GGTCAAACAAGCCCTGTGCGACATCCTGACCGATCATTTGAAGCCCCTGGAGAAATCCTTTCCTCTGGAATCGAGCAAAC
CACTGGTAGTCATGATTGCCGGGGTGAATGGTGCAGGTAAAACCACGTCTATCGGTAAGTTGGCCCACACCTTCCAGGAG
CAGGGCGCAAAAGTCTTGTTGGCCGCCGGTGATACCTTCCGTGCTGCCGCTCGTGAACAGCTGATTGAGTGGGGCACCCG
CAATAACGTCAGTGTTATTGCTCAGGACGGTGGTGACCCCGCCGCGGTGGCGTTTGATGCTGTGCATGCAGGGCGTGCCC
GCGATATGGGCGTGGTCATGGTGGATACCGCCGGCCGCTTGCCAACCCAGCTTCACCTGATGGAAGAGCTCAAGAAGATC
AAGCGCGTCATCGGCAAGGCCGATGGTCAGGCTCCTCATGAAATTCTCTTGGTTGTGGACGGCAATACCGGCCAGAACGC
CATTTCGCAGATCCGTGCCTTTGATGCAGCCTTGGGTCTGACTGGCCTGGTGGTTACCAAGCTGGACGGTACGGCCAAAG
GCGGTACGCTGGCTGCCGTTGCTGCCTGTGCGCAAGGCGTACGTCCTATTCCGGTTTACTGGATTGGCGTGGGCGAGGGC
ATGCAGGATCTGCAGGCCTTTGTGGCCCGTGAGTTTGCGTCGGCCTTGTTGGGCATGAACGCTTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (135-338)

• SRP54-type protein, helical bundle domain (SRP54_N) (52-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	59.477	89.736	0.534