Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY95_RS05690 Genome accession   NZ_CP028734
Coordinates   1186586..1187101 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain A42     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181586..1192101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY95_RS05645 (AOY95_05925) csrA 1182441..1182626 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AOY95_RS05675 (AOY95_05955) yqaB 1183816..1184382 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY95_RS05680 (AOY95_05960) yqaA 1184379..1184807 (+) 429 WP_001287462.1 YqaA family protein -
  AOY95_RS05685 (AOY95_05965) gshA 1184880..1186436 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY95_RS05690 (AOY95_05970) luxS 1186586..1187101 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AOY95_RS05695 (AOY95_05975) - 1187152..1188264 (-) 1113 WP_001525433.1 ATP-binding protein -
  AOY95_RS05700 (AOY95_05980) - 1188261..1188968 (-) 708 WP_001097131.1 RNA ligase family protein -
  AOY95_RS05705 (AOY95_05985) emrB 1189226..1190764 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY95_RS05710 (AOY95_05990) emrA 1190781..1191953 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=245481 AOY95_RS05690 WP_001130211.1 1186586..1187101(+) (luxS) [Escherichia coli strain A42]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=245481 AOY95_RS05690 WP_001130211.1 1186586..1187101(+) (luxS) [Escherichia coli strain A42]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAACTGAACGTCTACCAGTGCGGCACTTACCAGATGC
ACTCATTGCAGGAGGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment