Detailed information NTG0245478

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY95_RS05345
• Genome accession: NZ_CP028734
• Coordinates: 1120978..1121970 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A42
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1115978..1126970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY95_RS05315 (AOY95_05590)	ispD	1116039..1116749 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY95_RS05320 (AOY95_05595)	ispF	1116749..1117228 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY95_RS05325 (AOY95_05600)	truD	1117225..1118274 (+)	1050	WP_000568954.1	tRNA pseudouridine(13) synthase TruD	-
AOY95_RS05330 (AOY95_05605)	surE	1118255..1119016 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY95_RS05335 (AOY95_05610)	pcm	1119010..1119636 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY95_RS05340 (AOY95_05615)	nlpD	1119821..1120915 (+)	1095	WP_306304869.1	murein hydrolase activator NlpD	-
AOY95_RS05345 (AOY95_05620)	rpoS	1120978..1121970 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY95_RS05350 (AOY95_05625)	-	1122148..1122699 (-)	552	WP_001179444.1	flavodoxin family protein	-
AOY95_RS05355 (AOY95_05630)	-	1122924..1123967 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AOY95_RS05360 (AOY95_05635)	ygbN	1124110..1125474 (-)	1365	WP_000104433.1	GntP family transporter	-
AOY95_RS05365 (AOY95_05640)	ygbM	1125563..1126339 (-)	777	WP_001525482.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245478 AOY95_RS05345 WP_000081550.1 1120978..1121970(+) (rpoS) [Escherichia coli strain A42]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245478 AOY95_RS05345 WP_000081550.1 1120978..1121970(+) (rpoS) [Escherichia coli strain A42]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715