Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   YA91_RS10995 Genome accession   NZ_CP023248
Coordinates   573328..573846 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain MAVP-26     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 568328..578846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YA91_RS10985 (YA91_11630) gshA 571063..572631 (+) 1569 WP_005493959.1 glutamate--cysteine ligase -
  YA91_RS10990 (YA91_11635) - 572656..573261 (+) 606 WP_015297256.1 hypothetical protein -
  YA91_RS10995 (YA91_11640) luxS 573328..573846 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  YA91_RS11000 (YA91_11645) - 573908..575188 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  YA91_RS11005 (YA91_11650) - 575314..576108 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  YA91_RS11010 (YA91_11655) ffh 576321..577703 (+) 1383 WP_005462555.1 signal recognition particle protein -
  YA91_RS11015 (YA91_11660) rpsP 577913..578161 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  YA91_RS11020 (YA91_11665) rimM 578190..578738 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=245415 YA91_RS10995 WP_005462534.1 573328..573846(+) (luxS) [Vibrio parahaemolyticus strain MAVP-26]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=245415 YA91_RS10995 WP_005462534.1 573328..573846(+) (luxS) [Vibrio parahaemolyticus strain MAVP-26]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment