Detailed information NTG0245412

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: YA91_RS10865
• Genome accession: NZ_CP023248
• Coordinates: 550742..551731 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain MAVP-26
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 545742..556731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YA91_RS10830 (YA91_11475)	ftsB	545750..546031 (+)	282	WP_005455577.1	cell division protein FtsB	-
YA91_RS10835 (YA91_11480)	ispD	546033..546737 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
YA91_RS10840 (YA91_11485)	ispF	546755..547231 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
YA91_RS10845 (YA91_11490)	truD	547278..548321 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
YA91_RS10850 (YA91_11495)	surE	548321..549097 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
YA91_RS10855 (YA91_11500)	-	549097..549723 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
YA91_RS10860 (YA91_11505)	-	549738..550661 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
YA91_RS10865 (YA91_11510)	rpoS	550742..551731 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
YA91_RS10870 (YA91_11515)	mutS	551811..554372 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
YA91_RS10875 (YA91_11520)	pncC	554457..554939 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
YA91_RS10880 (YA91_11525)	recA	555140..556183 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=245412 YA91_RS10865 WP_005478537.1 550742..551731(+) (rpoS) [Vibrio parahaemolyticus strain MAVP-26]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=245412 YA91_RS10865 WP_005478537.1 550742..551731(+) (rpoS) [Vibrio parahaemolyticus strain MAVP-26]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851