Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY59_RS09140 Genome accession   NZ_CP028733
Coordinates   1910216..1911643 (-) Length   475 a.a.
NCBI ID   WP_089614347.1    Uniprot ID   -
Organism   Escherichia coli strain H2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1905216..1916643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY59_RS09110 (AOY59_09675) yeeZ 1905271..1906095 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  AOY59_RS09115 (AOY59_09680) yeeY 1906141..1907070 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AOY59_RS09120 (AOY59_09685) yoeI 1907285..1907347 (+) 63 WP_010723108.1 membrane protein YoeI -
  AOY59_RS09125 (AOY59_09690) plaP 1907337..1908695 (+) 1359 WP_074503481.1 putrescine/proton symporter PlaP -
  AOY59_RS09130 (AOY59_09695) tsuA 1908874..1909932 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY59_RS09135 (AOY59_09700) tsuB 1909946..1910173 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY59_RS09140 (AOY59_09705) sbcB 1910216..1911643 (-) 1428 WP_089614347.1 exodeoxyribonuclease I Machinery gene
  AOY59_RS09145 (AOY59_09710) dacD 1911852..1913018 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY59_RS09150 (AOY59_09715) sbmC 1913137..1913610 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  AOY59_RS09155 (AOY59_09720) yeeA 1913809..1914867 (+) 1059 WP_001200891.1 FUSC family protein -
  AOY59_RS09160 (AOY59_09725) tmaR 1915039..1915368 (+) 330 WP_000450409.1 DUF496 family protein -
  AOY59_RS09165 (AOY59_09730) - 1915469..1915834 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54511.79 Da        Isoelectric Point: 5.4589

>NTDB_id=245409 AOY59_RS09140 WP_089614347.1 1910216..1911643(-) (sbcB) [Escherichia coli strain H2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGTWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLREHLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=245409 AOY59_RS09140 WP_089614347.1 1910216..1911643(-) (sbcB) [Escherichia coli strain H2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGACATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCATTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment