Detailed information NTG0245397

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY59_RS05255
• Genome accession: NZ_CP028733
• Coordinates: 1092248..1093240 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain H2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1087248..1098240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY59_RS05225 (AOY59_05585)	ispD	1087309..1088019 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY59_RS05230 (AOY59_05590)	ispF	1088019..1088498 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY59_RS05235 (AOY59_05595)	truD	1088495..1089544 (+)	1050	WP_096948958.1	tRNA pseudouridine(13) synthase TruD	-
AOY59_RS05240 (AOY59_05600)	surE	1089525..1090286 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY59_RS05245 (AOY59_05605)	pcm	1090280..1090906 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY59_RS05250 (AOY59_05610)	nlpD	1091091..1092185 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY59_RS05255 (AOY59_05615)	rpoS	1092248..1093240 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY59_RS05260 (AOY59_05620)	-	1093361..1093768 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY59_RS05265 (AOY59_05625)	-	1093915..1094508 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY59_RS05270 (AOY59_05630)	-	1094508..1095935 (+)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY59_RS05275 (AOY59_05635)	-	1095946..1096182 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY59_RS05280 (AOY59_05640)	ygbN	1096222..1097586 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245397 AOY59_RS05255 WP_000081550.1 1092248..1093240(+) (rpoS) [Escherichia coli strain H2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245397 AOY59_RS05255 WP_000081550.1 1092248..1093240(+) (rpoS) [Escherichia coli strain H2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715