Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   YA91_RS04010 Genome accession   NZ_CP023247
Coordinates   895124..896305 (+) Length   393 a.a.
NCBI ID   WP_005498606.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-26     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 890124..901305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YA91_RS03995 (YA91_03445) - 890397..892619 (+) 2223 WP_021448064.1 M9 family metallopeptidase -
  YA91_RS04000 (YA91_03440) - 892799..893536 (+) 738 WP_005454086.1 EAL domain-containing protein -
  YA91_RS04005 (YA91_03435) ylqF 893826..894770 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  YA91_RS04010 (YA91_03430) cqsA 895124..896305 (+) 1182 WP_005498606.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  YA91_RS04015 (YA91_03425) cqsS 896383..898431 (-) 2049 WP_005498604.1 hybrid sensor histidine kinase/response regulator Regulator
  YA91_RS04020 (YA91_03420) - 898751..899368 (+) 618 WP_005498603.1 HAD family phosphatase -
  YA91_RS04025 (YA91_03415) - 899455..900003 (-) 549 WP_005481267.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43752.07 Da        Isoelectric Point: 6.6121

>NTDB_id=245397 YA91_RS04010 WP_005498606.1 895124..896305(+) (cqsA) [Vibrio parahaemolyticus strain MAVP-26]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKGLAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=245397 YA91_RS04010 WP_005498606.1 895124..896305(+) (cqsA) [Vibrio parahaemolyticus strain MAVP-26]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGTACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGGACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment