Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CJ306_RS27005 Genome accession   NZ_CP023245
Coordinates   5162163..5163512 (-) Length   449 a.a.
NCBI ID   WP_119684129.1    Uniprot ID   -
Organism   Bacillus cereus strain HBL-AI     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5157163..5168512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ306_RS26970 (CJ306_27695) - 5157194..5157889 (-) 696 WP_000466505.1 hypothetical protein -
  CJ306_RS26975 (CJ306_27700) - 5157876..5158664 (-) 789 WP_000120052.1 hypothetical protein -
  CJ306_RS26980 (CJ306_27705) - 5158696..5159265 (-) 570 WP_048655519.1 hypothetical protein -
  CJ306_RS26985 (CJ306_27710) - 5159383..5159865 (-) 483 WP_000023374.1 hypothetical protein -
  CJ306_RS26990 (CJ306_27715) raiA 5160270..5160812 (-) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  CJ306_RS26995 (CJ306_27720) cspC 5161135..5161332 (-) 198 WP_001990088.1 cold shock protein CspC -
  CJ306_RS27000 (CJ306_27725) - 5161459..5162163 (-) 705 WP_013142274.1 ComF family protein -
  CJ306_RS27005 (CJ306_27730) comFA 5162163..5163512 (-) 1350 WP_119684129.1 ATP-dependent helicase ComFA Machinery gene
  CJ306_RS27010 (CJ306_27735) - 5163640..5165070 (-) 1431 WP_119684130.1 C40 family peptidase -
  CJ306_RS27015 (CJ306_27740) - 5165219..5165533 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  CJ306_RS27020 (CJ306_27745) - 5165706..5166548 (-) 843 WP_119684221.1 DegV family protein -
  CJ306_RS27025 (CJ306_27750) - 5166785..5167420 (+) 636 WP_000926669.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51170.01 Da        Isoelectric Point: 9.8593

>NTDB_id=245389 CJ306_RS27005 WP_119684129.1 5162163..5163512(-) (comFA) [Bacillus cereus strain HBL-AI]
MLAGKQLLLEELSSDLQRELNDLKKKGEVICVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSAGQDLAAQGVIEAIRQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGIHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=245389 CJ306_RS27005 WP_119684129.1 5162163..5163512(-) (comFA) [Bacillus cereus strain HBL-AI]
ATGCTAGCGGGGAAACAGTTACTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCATATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGAGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACAGTGGAACGGGACGTT
GTCTGCTGGACAAGATTTGGCGGCGCAAGGAGTTATAGAGGCTATCAGGCAAAAAGAATCCTTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGATACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCATATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

DEAD/DEAH box helicase (DEAD)

(118-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503

Multiple sequence alignment