Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CJ306_RS22465 Genome accession   NZ_CP023245
Coordinates   4320878..4321624 (-) Length   248 a.a.
NCBI ID   WP_119683935.1    Uniprot ID   -
Organism   Bacillus cereus strain HBL-AI     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4315878..4326624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ306_RS22450 (CJ306_23020) dnaG 4316639..4318435 (-) 1797 WP_000528221.1 DNA primase -
  CJ306_RS31170 - 4318517..4318660 (-) 144 WP_000479733.1 hypothetical protein -
  CJ306_RS22455 (CJ306_23035) - 4319296..4320108 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  CJ306_RS22460 (CJ306_23040) - 4320138..4320770 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  CJ306_RS22465 (CJ306_23045) recO 4320878..4321624 (-) 747 WP_119683935.1 DNA repair protein RecO Machinery gene
  CJ306_RS22470 (CJ306_23050) - 4321658..4321801 (-) 144 WP_000883924.1 YqzL family protein -
  CJ306_RS22475 (CJ306_23055) era 4321978..4322883 (-) 906 WP_001080230.1 GTPase Era -
  CJ306_RS22480 (CJ306_23060) - 4322876..4323274 (-) 399 WP_001086285.1 cytidine deaminase -
  CJ306_RS22485 (CJ306_23065) - 4323374..4323727 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  CJ306_RS22490 (CJ306_23070) ybeY 4323724..4324194 (-) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  CJ306_RS22495 (CJ306_23075) - 4324191..4326335 (-) 2145 WP_000091510.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28591.18 Da        Isoelectric Point: 8.0566

>NTDB_id=245379 CJ306_RS22465 WP_119683935.1 4320878..4321624(-) (recO) [Bacillus cereus strain HBL-AI]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGSVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=245379 CJ306_RS22465 WP_119683935.1 4320878..4321624(-) (recO) [Bacillus cereus strain HBL-AI]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAGTGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment