Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CJ306_RS21870 Genome accession   NZ_CP023245
Coordinates   4220724..4222463 (-) Length   579 a.a.
NCBI ID   WP_000947767.1    Uniprot ID   A0A0J7GMG5
Organism   Bacillus cereus strain HBL-AI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4215724..4227463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ306_RS21835 (CJ306_22400) - 4215956..4216189 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  CJ306_RS21840 (CJ306_22405) - 4216239..4216967 (-) 729 WP_000172575.1 glycerophosphodiester phosphodiesterase -
  CJ306_RS21845 (CJ306_22410) - 4217018..4217164 (+) 147 WP_001247671.1 YycC family protein -
  CJ306_RS21850 (CJ306_22415) - 4217406..4217969 (-) 564 WP_119683913.1 PRK06770 family protein -
  CJ306_RS21855 (CJ306_22420) spo0A 4218222..4219016 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  CJ306_RS21865 (CJ306_22430) spoIVB 4219307..4220605 (-) 1299 WP_119683914.1 SpoIVB peptidase -
  CJ306_RS21870 (CJ306_22435) recN 4220724..4222463 (-) 1740 WP_000947767.1 DNA repair protein RecN Machinery gene
  CJ306_RS21875 (CJ306_22440) argR 4222724..4223173 (-) 450 WP_001032580.1 arginine repressor ArgR -
  CJ306_RS21880 (CJ306_22445) - 4223316..4224155 (-) 840 WP_119683915.1 TlyA family RNA methyltransferase -
  CJ306_RS21885 (CJ306_22450) dxs 4224159..4226051 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CJ306_RS21890 (CJ306_22455) ispA 4226353..4227243 (-) 891 WP_000150380.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65821.91 Da        Isoelectric Point: 4.8277

>NTDB_id=245377 CJ306_RS21870 WP_000947767.1 4220724..4222463(-) (recN) [Bacillus cereus strain HBL-AI]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=245377 CJ306_RS21870 WP_000947767.1 4220724..4222463(-) (recN) [Bacillus cereus strain HBL-AI]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAGAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAGGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGTTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCACGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCGCCAGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGAGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J7GMG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment