Detailed information NTG0245352

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY60_RS18350
• Genome accession: NZ_CP028732
• Coordinates: 3785656..3786648 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain H3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3780656..3791648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY60_RS18330 (AOY60_19500)	otnK	3781431..3782693 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
AOY60_RS18335 (AOY60_19505)	ygbL	3782690..3783328 (+)	639	WP_001278994.1	aldolase	-
AOY60_RS18340 (AOY60_19510)	ygbM	3783333..3784109 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AOY60_RS18345 (AOY60_19515)	ygbN	3784198..3785562 (+)	1365	WP_000104459.1	GntP family transporter	-
AOY60_RS18350 (AOY60_19520)	rpoS	3785656..3786648 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY60_RS18355 (AOY60_19525)	nlpD	3786711..3787805 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY60_RS18360 (AOY60_19530)	pcm	3787990..3788616 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY60_RS18365 (AOY60_19535)	surE	3788610..3789371 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY60_RS18370 (AOY60_19540)	truD	3789352..3790401 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AOY60_RS18375 (AOY60_19545)	ispF	3790398..3790877 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY60_RS18380 (AOY60_19550)	ispD	3790877..3791587 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245352 AOY60_RS18350 WP_000081550.1 3785656..3786648(-) (rpoS) [Escherichia coli strain H3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245352 AOY60_RS18350 WP_000081550.1 3785656..3786648(-) (rpoS) [Escherichia coli strain H3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715