Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CLI14_RS11620 Genome accession   NZ_CP023208
Coordinates   2536453..2537436 (-) Length   327 a.a.
NCBI ID   WP_013857714.1    Uniprot ID   -
Organism   Vibrio anguillarum strain ATCC-68554     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2531453..2542436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI14_RS11610 (CLI14_11610) cysM 2532615..2533505 (+) 891 WP_026027976.1 cysteine synthase CysM -
  CLI14_RS11615 (CLI14_11615) mutS 2533748..2536336 (+) 2589 WP_029189955.1 DNA mismatch repair protein MutS -
  CLI14_RS11620 (CLI14_11620) rpoS 2536453..2537436 (-) 984 WP_013857714.1 RNA polymerase sigma factor RpoS Regulator
  CLI14_RS11625 (CLI14_11625) nlpD 2537509..2538441 (-) 933 WP_041769244.1 murein hydrolase activator NlpD -
  CLI14_RS11630 (CLI14_11630) - 2538447..2539073 (-) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CLI14_RS11635 (CLI14_11635) surE 2539073..2539819 (-) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  CLI14_RS11640 (CLI14_11640) truD 2539832..2540929 (-) 1098 WP_013857717.1 tRNA pseudouridine(13) synthase TruD -
  CLI14_RS11645 (CLI14_11645) ispF 2541084..2541569 (-) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CLI14_RS11650 (CLI14_11650) ispD 2541562..2542293 (-) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37663.41 Da        Isoelectric Point: 4.4722

>NTDB_id=245328 CLI14_RS11620 WP_013857714.1 2536453..2537436(-) (rpoS) [Vibrio anguillarum strain ATCC-68554]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDTNNSDP
EISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEA
LFNVEYD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=245328 CLI14_RS11620 WP_013857714.1 2536453..2537436(-) (rpoS) [Vibrio anguillarum strain ATCC-68554]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAATTTGATCCAGAACGTGGCT
TTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAACCAAACGCGCACTATCCGT
TTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCAGAAGTTAGATCATGAACC
TACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTACGTCTGAACGAGCGTATCA
GTTCCGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGATACGAACAACTCTGATCCT
GAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAACCCAAAACAAAAAGAGGT
ACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTCGGGCGCGAAATTAACTTAACCCGTG
AACGAGTTCGTCAAATTCAAGTGGAAGGTCTACGTCGTTTGAGAGAGATCTTGGTTAAACAAGGCTTGAACATGGAAGCG
CTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

85.03

100

0.869

Multiple sequence alignment