Detailed information NTG0245311

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CLI14_RS05850
• Genome accession: NZ_CP023208
• Coordinates: 1234910..1236334 (-)
• Length: 474 a.a.
• NCBI ID: WP_013856630.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain ATCC-68554
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1229910..1241334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLI14_RS05835 (CLI14_05835)	cdd	1232677..1233564 (-)	888	WP_013856628.1	cytidine deaminase	-
CLI14_RS05840 (CLI14_05840)	-	1233773..1234453 (-)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CLI14_RS05845 (CLI14_05845)	-	1234453..1234785 (-)	333	WP_033197434.1	CidA/LrgA family protein	-
CLI14_RS05850 (CLI14_05850)	sbcB	1234910..1236334 (-)	1425	WP_013856630.1	exodeoxyribonuclease I	Machinery gene
CLI14_RS05855 (CLI14_05855)	-	1236486..1237853 (-)	1368	WP_026028454.1	L-cystine transporter	-
CLI14_RS05860 (CLI14_05860)	-	1238074..1238757 (-)	684	WP_013856632.1	NAD(P)H-binding protein	-
CLI14_RS05865 (CLI14_05865)	-	1238974..1240932 (+)	1959	WP_013856634.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54593.05 Da
• Isoelectric Point: 5.4372

>NTDB_id=245311 CLI14_RS05850 WP_013856630.1 1234910..1236334(-) (sbcB) [Vibrio anguillarum strain ATCC-68554]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCAILAPAKTLTAENAD
HIGVDRNLCLEHLALLKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=245311 CLI14_RS05850 WP_013856630.1 1234910..1236334(-) (sbcB) [Vibrio anguillarum strain ATCC-68554]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGTGAACCACTGGTTATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTAGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTATACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCACTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCGCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCCTCAAGCAGTACCCAGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGATCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTAACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.973	99.789	0.808