Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DBA17_RS27895 Genome accession   NZ_CP028719
Coordinates   6247270..6248049 (-) Length   259 a.a.
NCBI ID   WP_037663236.1    Uniprot ID   A0A1X4GW49
Organism   Streptomyces sp. endophyte_N2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6242270..6253049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS27880 - 6242391..6244358 (+) 1968 WP_128792001.1 IucA/IucC family protein -
  DBA17_RS27885 - 6244468..6245103 (+) 636 WP_128793914.1 GNAT family N-acetyltransferase -
  DBA17_RS27890 - 6245180..6247189 (+) 2010 WP_128792002.1 ATP-dependent DNA helicase -
  DBA17_RS27895 dinR/lexA 6247270..6248049 (-) 780 WP_037663236.1 transcriptional repressor LexA Regulator
  DBA17_RS27900 nrdR 6248636..6249205 (+) 570 WP_128792003.1 transcriptional regulator NrdR -
  DBA17_RS27905 - 6249369..6252269 (+) 2901 WP_128792004.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28023.73 Da        Isoelectric Point: 6.9854

>NTDB_id=245283 DBA17_RS27895 WP_037663236.1 6247270..6248049(-) (dinR/lexA) [Streptomyces sp. endophyte_N2]
MTTTADSATITAQDRSQGRVEPVHAMNEATNPEGPRRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVSVQPTDTSGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=245283 DBA17_RS27895 WP_037663236.1 6247270..6248049(-) (dinR/lexA) [Streptomyces sp. endophyte_N2]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGGGTCGAGCCGGTACATGCGATGAA
CGAAGCCACGAATCCCGAGGGGCCCCGGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGACTCA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGATACCCGCCGTCCATGCGAGAGATC
GGCCAGGCCGTCGGCCTCTCCAGCACGTCCTCCGTGGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGATCCGCACCGCCCGCGCGCCTATGAGGTGCGCGGCTCCGACCAGGCCGTGTCGGTGCAGCCCACGGACACCAGCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCGGAGGAATCCGTGGAGGAC
GTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCATGCTGG
ACGGCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCCGGCGACGACGCCACCATCCTGGGCAAGGTGGTCGCCGTACTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X4GW49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378