Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DBA17_RS19350 Genome accession   NZ_CP028719
Coordinates   4389739..4390860 (+) Length   373 a.a.
NCBI ID   WP_128790867.1    Uniprot ID   A0A7W3RM18
Organism   Streptomyces sp. endophyte_N2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4384739..4395860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS19340 dnaN 4387463..4388593 (+) 1131 WP_128790866.1 DNA polymerase III subunit beta -
  DBA17_RS19345 gnd 4388777..4389652 (+) 876 WP_037650380.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  DBA17_RS19350 recF 4389739..4390860 (+) 1122 WP_128790867.1 DNA replication/repair protein RecF Machinery gene
  DBA17_RS19355 - 4390857..4391393 (+) 537 WP_085565626.1 DciA family protein -
  DBA17_RS19360 gyrB 4391816..4393864 (+) 2049 WP_128790868.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40717.42 Da        Isoelectric Point: 8.4035

>NTDB_id=245256 DBA17_RS19350 WP_128790867.1 4389739..4390860(+) (recF) [Streptomyces sp. endophyte_N2]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRMGAERAVIRAQVRQGDRQ
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRTMDLSTLDVWDQHLAHAGAELLARRLDLIAALRPLADKAYEQLAPGGGPLALEYKPSAPGEAH
TREDLYAQLLAALAEARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYELLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPHVLAGARYSVSGGTVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=245256 DBA17_RS19350 WP_128790867.1 4389739..4390860(+) (recF) [Streptomyces sp. endophyte_N2]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTCCCGCTCGACCCGGGCGTCACGGC
CTTCGTCGGGCCCAACGGCCAGGGCAAGACCAACCTGGTGGAGGCGGTCGGCTATCTGGCGACCCTGGGCAGCCACCGCG
TCGCCTCCGACGCGCCCCTGGTGCGCATGGGCGCCGAGCGCGCCGTCATCAGGGCGCAGGTCCGCCAGGGCGACCGGCAG
CAGCTGATCGAGCTCGAGCTGAACCCCGGCCGTGCCAACCGCGCCCGGATCAACCGGTCCTCGCAGGTCAGACCCCGGGA
CGTGCTGGGCATCGTACGGACCGTGCTGTTCGCGCCCGAGGACCTCGCCCTGGTGAAGGGCGACCCCGGGGAGCGGCGCA
GGTTCCTGGACGAGCTGATCACCGCGCGCTCCCCGCGGATGGCCGGGGTGCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTCCTGAAGTCCGCGGCGCTCGCGCGCAGGCACGGCGGCAGGACCATGGACCTGTCCACGCTCGACGTGTG
GGACCAGCACCTCGCGCACGCCGGTGCCGAGCTGCTCGCCCGGCGGCTCGATCTGATCGCCGCGCTGCGGCCGCTGGCCG
ACAAGGCGTACGAGCAGCTGGCGCCCGGCGGCGGCCCGCTCGCGCTGGAGTACAAGCCGTCCGCGCCCGGTGAGGCCCAC
ACCCGCGAGGACCTGTACGCGCAGCTGCTGGCCGCCCTGGCCGAGGCGCGCAAGCAGGAGATCGAGCGGGGCGTCACCCT
CGTCGGCCCCCATCGGGACGACCTGGTCCTGAAACTCGGCCAGTTGCCCGCCAAGGGCTATGCCTCGCACGGCGAGTCCT
GGTCGTACGCCCTCGCCCTGCGCCTCGCCTCGTACGAGCTGCTGCGCGCCGAGGGCAACGAGCCCGTCCTCGTCCTGGAC
GACGTCTTCGCCGAGCTGGACGCGCGCCGCCGCGAGCGGCTCGCCGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTCAC
CGCGGCCGTGGACGACGATGTCCCGCATGTGCTGGCCGGGGCGCGGTACTCCGTCTCGGGTGGGACGGTGGAACGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W3RM18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.418

94.906

0.365