Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   DBA17_RS16330 Genome accession   NZ_CP028719
Coordinates   3767887..3768888 (-) Length   333 a.a.
NCBI ID   WP_128790444.1    Uniprot ID   A0A7W3NPK7
Organism   Streptomyces sp. endophyte_N2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3762887..3773888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS16305 - 3763626..3764372 (+) 747 WP_128790443.1 DUF6227 family protein -
  DBA17_RS16310 - 3764425..3764673 (-) 249 WP_046421631.1 hypothetical protein -
  DBA17_RS16315 - 3764860..3765846 (+) 987 WP_206660430.1 YafY family protein -
  DBA17_RS16320 - 3765843..3766013 (-) 171 Protein_3202 TetR family transcriptional regulator -
  DBA17_RS16325 - 3766461..3766856 (-) 396 Protein_3203 TetR family transcriptional regulator -
  DBA17_RS16330 rpoS 3767887..3768888 (-) 1002 WP_128790444.1 sigma-70 family RNA polymerase sigma factor Regulator
  DBA17_RS16335 - 3769083..3769613 (+) 531 WP_128793707.1 GNAT family N-acetyltransferase -
  DBA17_RS16340 - 3769639..3770433 (-) 795 WP_128790445.1 class III extradiol ring-cleavage dioxygenase -
  DBA17_RS16345 - 3770550..3771059 (+) 510 WP_128790446.1 MarR family transcriptional regulator -
  DBA17_RS16350 - 3771088..3772623 (-) 1536 WP_128790447.1 MFS transporter -
  DBA17_RS16355 - 3772789..3773448 (-) 660 WP_037657713.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37296.00 Da        Isoelectric Point: 5.0447

>NTDB_id=245252 DBA17_RS16330 WP_128790444.1 3767887..3768888(-) (rpoS) [Streptomyces sp. endophyte_N2]
MATRAVARRKSAVSGETADSASSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGFEDTTS
DATREELESLVAAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPTEIAAELGSTPERVTDVLDWARDPVSLNMPVDDQGETQ
FGDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=245252 DBA17_RS16330 WP_128790444.1 3767887..3768888(-) (rpoS) [Streptomyces sp. endophyte_N2]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCGTCTCCGGCGAGACGGCCGACTCGGCAAGCAGTGTTCGCGCTCA
TGGCGGCGAGATCGCGGACCGCGACCTGGTCGGCATGTACCTCGACGAGATAGCGCGCACACCGCTGCTCGACGCCGCCA
AGGAGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGACAGGTTCTCGACGGGTTCGAGGACACCACCTCG
GACGCCACCCGTGAGGAGCTGGAGTCCCTGGTCGCCGCGGGCGAGCGGGCCAAGGACGTCTTCATCCGTTCCAACCTCCG
CCTGGTCGTCGCGGTCGCCCGGCGCTACCCGCGCAGCGGTCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGCACGGCCGTGAGCCGGAGCCCACGGAGATCGCGGCGGAGCTGGGCTCCACGCCGG
AGCGCGTCACCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCGGTCAGCCCCGAGCAGTCCGTGATGACCCTGCTGCGCAGCGAGGAACTGGA
CGACCTGATCGGCCGCCTGGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGCA
CCCTGACCGAGGTCGGCAAGGAGCACGGTCTGACCCGCGAGCGCATCCGGCAGATCGAGAAGCACGCCCTGCTGGAGCTG
AAGAAGCTGGCGCGGGACACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(35-68)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W3NPK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.82

96.697

0.375

Multiple sequence alignment