Detailed information NTG0245201

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DBB47_RS19370
• Genome accession: NZ_CP028703
• Coordinates: 3728323..3729351 (-)
• Length: 342 a.a.
• NCBI ID: WP_108118797.1
• Uniprot ID: -
• Organism: Escherichia coli strain ME8067
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3723323..3734351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBB47_RS19350 (DBB47_19350)	otnK	3724099..3725265 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
DBB47_RS19355 (DBB47_19355)	ygbL	3725357..3725995 (+)	639	WP_001278994.1	aldolase	-
DBB47_RS19360 (DBB47_19360)	ygbM	3726000..3726776 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
DBB47_RS19365 (DBB47_19365)	ygbN	3726865..3728229 (+)	1365	WP_000104441.1	GntP family transporter	-
DBB47_RS19370 (DBB47_19370)	rpoS	3728323..3729351 (-)	1029	WP_108118797.1	RNA polymerase sigma factor RpoS	Regulator
DBB47_RS19375 (DBB47_19375)	nlpD	3729378..3730472 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DBB47_RS19380 (DBB47_19380)	pcm	3730657..3731283 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DBB47_RS19385 (DBB47_19385)	surE	3731277..3732038 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DBB47_RS19390 (DBB47_19390)	truD	3732019..3733068 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DBB47_RS19395 (DBB47_19395)	ispF	3733065..3733544 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DBB47_RS19400 (DBB47_19400)	ispD	3733544..3734254 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 342 a.a.
• Molecular weight: 39326.39 Da
• Isoelectric Point: 4.7172

>NTDB_id=245201 DBB47_RS19370 WP_108118797.1 3728323..3729351(-) (rpoS) [Escherichia coli strain ME8067]
MFRQGITGRSHLTSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS
PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW
WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG
DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE
GLRRLREILQTQGLNIEALFRE

Nucleotide

• Length: 1029 bp

>NTDB_id=245201 DBB47_RS19370 WP_108118797.1 3728323..3729351(-) (rpoS) [Escherichia coli strain ME8067]
ATGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTACGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGC
GGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGAAAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCG
AAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTGTGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCA
CCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCGCGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGAT
CGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCGCCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAG
AGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGTTTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGG
TGGATTCGCCAGACGATTGAACGGGCGATTATGAACCAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCT
GAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCATAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAAC
TGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTCGTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGT
GATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGATGAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATAT
GAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAACGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGG
GGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTGAAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAG
GGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (186-260)

• Sigma-70 region 2 (Sigma70_r2) (106-175)

• Sigma-70, region 4 (Sigma70_r4) (274-327)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (68-100)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	94.444	0.69