Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SYC_RS09830 Genome accession   NC_006576
Coordinates   1998790..1999953 (+) Length   387 a.a.
NCBI ID   WP_011244158.1    Uniprot ID   Q5N0Y2
Organism   Synechococcus elongatus PCC 6301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993790..2004953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS09815 (syc1846_d) ppc 1995078..1998101 (+) 3024 WP_039755577.1 phosphoenolpyruvate carboxylase -
  SYC_RS14005 - 1998064..1998405 (-) 342 WP_039755578.1 hypothetical protein -
  SYC_RS09830 (syc1848_d) recF 1998790..1999953 (+) 1164 WP_011244158.1 DNA replication/repair protein RecF Machinery gene
  SYC_RS09835 - 2000185..2000367 (-) 183 WP_039755580.1 hypothetical protein -
  SYC_RS09840 (syc1849_d) speD 2000541..2000966 (+) 426 WP_011378372.1 adenosylmethionine decarboxylase -
  SYC_RS09845 (syc1850_d) - 2001301..2001576 (+) 276 WP_011244160.1 HU family DNA-binding protein -
  SYC_RS09850 - 2001676..2001876 (-) 201 WP_039755581.1 hypothetical protein -
  SYC_RS09855 (syc1851_c) mutS 2002070..2004718 (-) 2649 WP_011244161.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 43894.10 Da        Isoelectric Point: 7.6802

>NTDB_id=24512 SYC_RS09830 WP_011244158.1 1998790..1999953(+) (recF) [Synechococcus elongatus PCC 6301]
MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGAESALLTAVVERDSGE
QQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDLDLVRGGPQQRRVWLDRLLIQLQPIYAHLQQQYGRVLRQ
RNALLRRAESLDLALLAPLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEAIAWQ
ERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQASQGQQRTLVLSLKLAELELIEAVLGEPPLLLLDDVLAE
LDLRRQQQLLEAIANRFQTLITTTHLSAFDQSWVETAQILTVQSGHLQSEAVPMAPSSASLHKSLDS

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=24512 SYC_RS09830 WP_011244158.1 1998790..1999953(+) (recF) [Synechococcus elongatus PCC 6301]
ATGTTTTTGCATAGCCTTCACCTTCAACACTTTCGCAACTATCGCGATCAAACGGTGCAGTTCCAAGCTCCAAAGACAAT
CCTGCTCGGCGAAAACGCCCAGGGCAAAACCAATCTGCTGGAAGCCGTTGAACTGTTCTCAACCCTGCGATCGCATCGGG
TCAGTCGCGATCGCGATTTGGTTCAGACCGGAGCTGAGTCAGCGCTTCTAACAGCGGTTGTTGAGCGCGACAGCGGCGAG
CAACAGTTGCAAATTCAGCTTCAACAACAAGGTCGGCGGCGGGTTCAGCGAGATGGCGAAGTCCTACGGCGACAGCTTGA
TCTGCTGGGCTCGCTCTGCAGCGTTCAATTTTCCTCCCTTGACCTGGACTTGGTACGAGGGGGGCCCCAGCAACGCCGTG
TCTGGCTCGATCGCCTGCTGATTCAACTCCAGCCGATCTATGCCCATCTGCAACAGCAATACGGGCGCGTGTTGCGGCAG
CGCAATGCCCTGCTGAGGCGGGCAGAGTCTCTCGATCTGGCACTGCTGGCGCCACTCAACTGGCAACTAGCTCAGCTCGG
TGTCCACATCATGCGGCGGCGATCGCGAGCAATTCAACGCCTTGTGCCCTTGGCTGCCCATTGGCACAGGGAAATTAGTG
GTCAACGGGAGCAACTGATCGTGGCCTATCAGCCCAGTGTGCTGGCCCCCGACGACACCGATGAGGCGATCGCGTGGCAA
GAACGAATGCTGGCGCAGATCGAGGCTCGGCGGGCGGCGGAATTAGGTCAACGCACCAGTCTGGTTGGCCCCCATCGTGA
TGACCTCAATCTCAGCATCAACGGTACTGAAGCCCGGCTTCAAGCATCCCAAGGGCAGCAGCGCACCTTAGTGCTGTCGC
TCAAGTTGGCGGAGCTGGAGTTGATCGAAGCAGTATTGGGCGAGCCGCCCCTGCTGTTGCTGGATGATGTCTTAGCAGAA
CTGGACCTTCGGCGACAGCAACAATTACTAGAAGCGATCGCCAACCGTTTTCAGACGCTGATTACAACCACGCATCTTTC
GGCCTTTGACCAAAGCTGGGTGGAGACCGCTCAAATCCTTACGGTGCAGTCGGGTCATTTGCAGTCTGAAGCGGTGCCGA
TGGCCCCAAGCAGCGCGTCCCTGCATAAGTCCCTGGATAGTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5N0Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

39.617

94.574

0.375

Multiple sequence alignment