Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CK945_RS15290 Genome accession   NZ_CP023168
Coordinates   2938896..2939666 (-) Length   256 a.a.
NCBI ID   WP_020452240.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2933896..2944666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS15270 - 2933971..2934783 (-) 813 WP_023855239.1 pyruvate, water dikinase regulatory protein -
  CK945_RS15275 - 2934809..2935447 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  CK945_RS15280 glyS 2935645..2937684 (-) 2040 WP_096748233.1 glycine--tRNA ligase subunit beta -
  CK945_RS15285 glyQ 2937677..2938564 (-) 888 WP_020452239.1 glycine--tRNA ligase subunit alpha -
  CK945_RS15290 recO 2938896..2939666 (-) 771 WP_020452240.1 DNA repair protein RecO Machinery gene
  CK945_RS15295 - 2939704..2939847 (-) 144 WP_003183626.1 YqzL family protein -
  CK945_RS15300 era 2940009..2940914 (-) 906 WP_023855242.1 GTPase Era -
  CK945_RS15305 - 2940895..2941305 (-) 411 WP_020452242.1 cytidine deaminase -
  CK945_RS15310 - 2941438..2941818 (-) 381 WP_020452243.1 diacylglycerol kinase family protein -
  CK945_RS15315 ybeY 2941796..2942272 (-) 477 WP_079289175.1 rRNA maturation RNase YbeY -
  CK945_RS15320 - 2942269..2944323 (-) 2055 WP_228119640.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29527.17 Da        Isoelectric Point: 8.3124

>NTDB_id=245119 CK945_RS15290 WP_020452240.1 2938896..2939666(-) (recO) [Bacillus paralicheniformis strain 14DA11]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYITELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=245119 CK945_RS15290 WP_020452240.1 2938896..2939666(-) (recO) [Bacillus paralicheniformis strain 14DA11]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATACGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCACTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGCGTGATGGGACTGTATCCGGAGCTGGATGAATGTGTACATTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTTAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTCATACAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.344

100

0.773

Multiple sequence alignment