Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CK945_RS11700 Genome accession   NZ_CP023168
Coordinates   2303042..2303470 (-) Length   142 a.a.
NCBI ID   WP_020451590.1    Uniprot ID   A0A6N2GRD1
Organism   Bacillus paralicheniformis strain 14DA11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2298042..2308470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS11670 tkt 2298625..2300628 (-) 2004 WP_023857593.1 transketolase -
  CK945_RS11675 - 2300792..2301025 (-) 234 WP_020451594.1 DUF896 domain-containing protein -
  CK945_RS11680 - 2301091..2301738 (-) 648 WP_020451593.1 recombinase family protein -
  CK945_RS11685 yneA 2301757..2302068 (-) 312 WP_020451592.1 cell division suppressor protein YneA -
  CK945_RS11690 lexA 2302220..2302843 (+) 624 WP_020451591.1 transcriptional repressor LexA -
  CK945_RS11700 nucA/comI 2303042..2303470 (-) 429 WP_020451590.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CK945_RS11710 - 2303764..2304603 (-) 840 WP_026579651.1 thymidylate synthase -
  CK945_RS11715 - 2304663..2305424 (-) 762 WP_041817207.1 hypothetical protein -
  CK945_RS11720 - 2305513..2306346 (-) 834 WP_020451587.1 prohibitin family protein -
  CK945_RS23585 - 2306339..2306479 (-) 141 WP_023857597.1 hypothetical protein -
  CK945_RS11725 wrbA 2306790..2307404 (-) 615 WP_020451586.1 NAD(P)H:quinone oxidoreductase -
  CK945_RS11730 - 2307606..2308214 (-) 609 WP_020451585.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15420.36 Da        Isoelectric Point: 7.8950

>NTDB_id=245109 CK945_RS11700 WP_020451590.1 2303042..2303470(-) (nucA/comI) [Bacillus paralicheniformis strain 14DA11]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDVLYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSDYADGTRILFIVR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=245109 CK945_RS11700 WP_020451590.1 2303042..2303470(-) (nucA/comI) [Bacillus paralicheniformis strain 14DA11]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTTGGGCTTTCGGGAGGGGCTGCATATTCTCC
TCAGCATGCCGAAGGCGCTGCAAGGTATGATGACGTATTGTATTTTCCGGCATCGCGCTATCCTGAAACAGGTGCTCATA
TAAGCGATGCGATCAAAGCGGGCCATTCAGATGTCTGCACAATTGAAAGATCTGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGATTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCGATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N2GRD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

88.732

0.528

Multiple sequence alignment