Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CK945_RS09885 Genome accession   NZ_CP023168
Coordinates   1898167..1899069 (+) Length   300 a.a.
NCBI ID   WP_096748092.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1893167..1904069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS09865 - 1893819..1895516 (+) 1698 WP_096748091.1 hypothetical protein -
  CK945_RS09870 - 1895513..1895797 (+) 285 WP_020451377.1 FlhB-like flagellar biosynthesis protein -
  CK945_RS09875 sucC 1895973..1897133 (+) 1161 WP_026579739.1 ADP-forming succinate--CoA ligase subunit beta -
  CK945_RS09880 sucD 1897152..1898054 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  CK945_RS09885 dprA 1898167..1899069 (+) 903 WP_096748092.1 DNA-processing protein DprA Machinery gene
  CK945_RS09890 topA 1899274..1901349 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  CK945_RS09895 trmFO 1901425..1902729 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CK945_RS09900 xerC 1902796..1903710 (+) 915 WP_035338771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33119.60 Da        Isoelectric Point: 10.1513

>NTDB_id=245105 CK945_RS09885 WP_096748092.1 1898167..1899069(+) (dprA) [Bacillus paralicheniformis strain 14DA11]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKIIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSCGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=245105 CK945_RS09885 WP_096748092.1 1898167..1899069(+) (dprA) [Bacillus paralicheniformis strain 14DA11]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAATCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCACAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTGCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36

Multiple sequence alignment