Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CK945_RS09080 Genome accession   NZ_CP023168
Coordinates   1737768..1738055 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732768..1743055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS09060 - 1734431..1734805 (+) 375 WP_020451232.1 YybH family protein -
  CK945_RS09065 - 1734930..1736162 (-) 1233 WP_020451233.1 aminopeptidase -
  CK945_RS09070 - 1736252..1736382 (-) 131 Protein_1751 protein YkpC -
  CK945_RS09075 mreBH 1736456..1737463 (-) 1008 WP_020451234.1 rod-share determining protein MreBH -
  CK945_RS09080 abrB 1737768..1738055 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CK945_RS09085 - 1738223..1739560 (+) 1338 WP_020451236.1 ATP-binding protein -
  CK945_RS09090 - 1739624..1740286 (+) 663 WP_020451237.1 potassium channel family protein -
  CK945_RS09095 ade 1740414..1742134 (+) 1721 Protein_1756 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=245104 CK945_RS09080 WP_020451235.1 1737768..1738055(+) (abrB) [Bacillus paralicheniformis strain 14DA11]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=245104 CK945_RS09080 WP_020451235.1 1737768..1738055(+) (abrB) [Bacillus paralicheniformis strain 14DA11]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment