Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CK945_RS06665 Genome accession   NZ_CP023168
Coordinates   1288949..1289527 (+) Length   192 a.a.
NCBI ID   WP_096747985.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283949..1294527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS24395 - 1284447..1284953 (-) 507 WP_370510583.1 methyl-accepting chemotaxis protein -
  CK945_RS24400 - 1285206..1285739 (-) 534 Protein_1267 protoglobin family protein -
  CK945_RS06650 - 1285846..1287396 (-) 1551 WP_198403087.1 FAD-dependent oxidoreductase -
  CK945_RS06655 - 1287517..1288374 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  CK945_RS06660 - 1288443..1288676 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  CK945_RS06665 comK 1288949..1289527 (+) 579 WP_096747985.1 competence protein ComK Regulator
  CK945_RS06670 - 1289521..1289886 (-) 366 WP_020450830.1 hypothetical protein -
  CK945_RS06675 - 1290094..1290705 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  CK945_RS06680 lepB 1290718..1291236 (+) 519 WP_020450832.1 signal peptidase I -
  CK945_RS06690 - 1291380..1293155 (-) 1776 WP_096747987.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22390.61 Da        Isoelectric Point: 8.6274

>NTDB_id=245091 CK945_RS06665 WP_096747985.1 1288949..1289527(+) (comK) [Bacillus paralicheniformis strain 14DA11]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILEADRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=245091 CK945_RS06665 WP_096747985.1 1288949..1289527(+) (comK) [Bacillus paralicheniformis strain 14DA11]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGGCTGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment