Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CK945_RS02585 Genome accession   NZ_CP023168
Coordinates   511082..512035 (+) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 506082..517035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS02570 - 506130..507557 (+) 1428 WP_039073204.1 sensor histidine kinase -
  CK945_RS24355 - 507589..508542 (-) 954 WP_373367326.1 methyl-accepting chemotaxis protein -
  CK945_RS24360 - 508543..509307 (-) 765 Protein_474 MCP four helix bundle domain-containing protein -
  CK945_RS02580 - 509443..510804 (-) 1362 WP_026580545.1 aspartate kinase -
  CK945_RS02585 ceuB 511082..512035 (+) 954 WP_026580546.1 ABC transporter permease Machinery gene
  CK945_RS02590 - 512025..512969 (+) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  CK945_RS02595 - 512969..513727 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  CK945_RS02600 - 513742..514689 (+) 948 WP_035337207.1 siderophore ABC transporter substrate-binding protein -
  CK945_RS02605 - 514871..516292 (-) 1422 WP_026580547.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=245085 CK945_RS02585 WP_026580546.1 511082..512035(+) (ceuB) [Bacillus paralicheniformis strain 14DA11]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=245085 CK945_RS02585 WP_026580546.1 511082..512035(+) (ceuB) [Bacillus paralicheniformis strain 14DA11]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTAACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment