Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CK945_RS00265 Genome accession   NZ_CP023168
Coordinates   48788..49078 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43788..54078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS00225 - 43812..44141 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  CK945_RS00230 - 44153..44593 (+) 441 WP_020449792.1 YaaR family protein -
  CK945_RS00235 holB 44605..45594 (+) 990 WP_096747834.1 DNA polymerase III subunit delta' -
  CK945_RS00240 - 45597..46424 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  CK945_RS00245 yabA 46439..46801 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  CK945_RS00250 - 46866..47609 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CK945_RS00255 - 47596..47889 (+) 294 WP_023855982.1 GIY-YIG nuclease family protein -
  CK945_RS00260 rsmI 47864..48738 (+) 875 Protein_39 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CK945_RS00265 abrB 48788..49078 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CK945_RS00270 metG 49586..51574 (+) 1989 WP_035337513.1 methionine--tRNA ligase -
  CK945_RS00275 - 51658..52425 (+) 768 WP_020449800.1 TatD family hydrolase -
  CK945_RS00280 - 52670..53866 (+) 1197 WP_020449801.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=245080 CK945_RS00265 WP_085959887.1 48788..49078(-) (abrB) [Bacillus paralicheniformis strain 14DA11]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=245080 CK945_RS00265 WP_085959887.1 48788..49078(-) (abrB) [Bacillus paralicheniformis strain 14DA11]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment