Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | SYC_RS08805 | Genome accession | NC_006576 |
| Coordinates | 1786527..1786868 (+) | Length | 113 a.a. |
| NCBI ID | WP_011243964.1 | Uniprot ID | A0A0H3K6W4 |
| Organism | Synechococcus elongatus PCC 6301 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1781527..1791868
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYC_RS08775 (syc1648_c) | - | 1781660..1782610 (-) | 951 | WP_011243958.1 | DUF4335 domain-containing protein | - |
| SYC_RS08780 (syc1649_c) | - | 1782617..1783336 (-) | 720 | WP_234701761.1 | DUF3038 domain-containing protein | - |
| SYC_RS08785 (syc1650_d) | - | 1783411..1783926 (+) | 516 | WP_011243960.1 | adenine phosphoribosyltransferase | - |
| SYC_RS08790 (syc1651_d) | - | 1783933..1784928 (+) | 996 | WP_039755550.1 | ABC transporter permease | - |
| SYC_RS08795 (syc1652_d) | pilM | 1785070..1786149 (+) | 1080 | WP_011243962.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| SYC_RS08800 (syc1653_d) | - | 1786152..1786490 (+) | 339 | WP_011243963.1 | hypothetical protein | - |
| SYC_RS08805 (syc1654_d) | pilN | 1786527..1786868 (+) | 342 | WP_011243964.1 | PilN domain-containing protein | Machinery gene |
| SYC_RS08810 (syc1655_d) | - | 1786865..1787659 (+) | 795 | WP_011243965.1 | hypothetical protein | - |
| SYC_RS08815 (syc1656_d) | - | 1787737..1790052 (+) | 2316 | WP_011378468.1 | secretin N-terminal domain-containing protein | - |
| SYC_RS08820 (syc1657_c) | - | 1790224..1790859 (-) | 636 | WP_011243967.1 | peroxiredoxin | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12212.81 Da Isoelectric Point: 8.5318
>NTDB_id=24508 SYC_RS08805 WP_011243964.1 1786527..1786868(+) (pilN) [Synechococcus elongatus PCC 6301]
MAVQISKIEQAGKKVTLQGSSSNYDSVNDLLLTLQQSRFFTASSLRIEEAKLGATPTQNTGENSPKLSNVNYRIVGELSD
VPTTDLLQNLRQLDAQGLAARLQGLVNQGVLKP
MAVQISKIEQAGKKVTLQGSSSNYDSVNDLLLTLQQSRFFTASSLRIEEAKLGATPTQNTGENSPKLSNVNYRIVGELSD
VPTTDLLQNLRQLDAQGLAARLQGLVNQGVLKP
Nucleotide
Download Length: 342 bp
>NTDB_id=24508 SYC_RS08805 WP_011243964.1 1786527..1786868(+) (pilN) [Synechococcus elongatus PCC 6301]
GTGGCAGTTCAGATCAGCAAGATTGAGCAGGCGGGCAAGAAGGTCACCCTACAGGGCAGTTCTTCTAACTACGACTCGGT
CAATGACCTGCTGCTGACCTTGCAGCAGTCGCGTTTCTTTACAGCTAGCAGCCTGCGGATTGAAGAGGCGAAATTAGGCG
CTACCCCTACTCAAAATACAGGGGAGAACAGTCCTAAGCTGTCGAATGTGAACTATCGCATTGTCGGTGAGCTCAGCGAC
GTTCCCACGACGGATCTCTTGCAAAATCTCCGTCAGCTCGATGCTCAAGGTCTTGCTGCTCGCCTGCAGGGATTAGTGAA
CCAAGGGGTACTGAAGCCATGA
GTGGCAGTTCAGATCAGCAAGATTGAGCAGGCGGGCAAGAAGGTCACCCTACAGGGCAGTTCTTCTAACTACGACTCGGT
CAATGACCTGCTGCTGACCTTGCAGCAGTCGCGTTTCTTTACAGCTAGCAGCCTGCGGATTGAAGAGGCGAAATTAGGCG
CTACCCCTACTCAAAATACAGGGGAGAACAGTCCTAAGCTGTCGAATGTGAACTATCGCATTGTCGGTGAGCTCAGCGAC
GTTCCCACGACGGATCTCTTGCAAAATCTCCGTCAGCTCGATGCTCAAGGTCTTGCTGCTCGCCTGCAGGGATTAGTGAA
CCAAGGGGTACTGAAGCCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Synechocystis sp. PCC 6803 |
33.333 |
100 |
0.372 |