Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DBB46_RS04475 Genome accession   NZ_CP028702
Coordinates   876234..876839 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain J53     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 871234..881839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBB46_RS04440 (DBB46_04440) rsmS 871939..872100 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  DBB46_RS04445 (DBB46_04445) priC 872114..872641 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  DBB46_RS04450 (DBB46_04450) ybaN 872711..873088 (+) 378 WP_001188905.1 DUF454 family protein -
  DBB46_RS04460 (DBB46_04460) apt 873241..873792 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DBB46_RS04465 (DBB46_04465) dnaX 873921..875852 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  DBB46_RS04470 (DBB46_04470) ybaB 875905..876234 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DBB46_RS04475 (DBB46_04475) recR 876234..876839 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DBB46_RS04480 (DBB46_04480) htpG 876949..878823 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  DBB46_RS04490 (DBB46_04490) adk 879004..879648 (+) 645 WP_001220233.1 adenylate kinase -
  DBB46_RS04495 (DBB46_04495) hemH 879884..880846 (+) 963 WP_001250103.1 ferrochelatase -
  DBB46_RS04500 (DBB46_04500) aes 880843..881802 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=245076 DBB46_RS04475 WP_001195025.1 876234..876839(+) (recR) [Escherichia coli strain J53]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=245076 DBB46_RS04475 WP_001195025.1 876234..876839(+) (recR) [Escherichia coli strain J53]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCTCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443