Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CLC88_RS06115 Genome accession   NZ_CP023165
Coordinates   1158655..1159284 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O22:H8 strain RM10809-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1153655..1164284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC88_RS06095 (CLC88_06300) ycbZ 1154056..1155816 (-) 1761 WP_000156526.1 Lon protease family protein -
  CLC88_RS06100 (CLC88_06305) matP 1156002..1156454 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CLC88_RS06105 (CLC88_06310) ompA 1156530..1157570 (-) 1041 WP_000750416.1 porin OmpA -
  CLC88_RS06110 (CLC88_06315) sulA 1157927..1158436 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CLC88_RS06115 (CLC88_06320) sxy/tfoX 1158655..1159284 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CLC88_RS06120 (CLC88_06325) yccS 1159247..1161409 (-) 2163 WP_072097439.1 YccS family putative transporter -
  CLC88_RS06125 (CLC88_06330) yccF 1161419..1161865 (-) 447 WP_001261231.1 YccF domain-containing protein -
  CLC88_RS06130 (CLC88_06335) helD 1161988..1164042 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=245037 CLC88_RS06115 WP_000839153.1 1158655..1159284(+) (sxy/tfoX) [Escherichia coli O22:H8 strain RM10809-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=245037 CLC88_RS06115 WP_000839153.1 1158655..1159284(+) (sxy/tfoX) [Escherichia coli O22:H8 strain RM10809-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment