Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CIW72_RS06540 Genome accession   NZ_CP023159
Coordinates   1421632..1422033 (+) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas citri pv. malvacearum strain MS14003     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416632..1427033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIW72_RS06520 (CIW72_06520) tsaB 1417866..1418585 (+) 720 WP_005913698.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  CIW72_RS06525 (CIW72_06525) - 1418582..1419499 (+) 918 WP_005913699.1 ADP-ribosylglycohydrolase family protein -
  CIW72_RS06530 (CIW72_06530) - 1419573..1420448 (-) 876 WP_005913700.1 TonB family protein -
  CIW72_RS06535 (CIW72_06535) gshB 1420445..1421395 (-) 951 WP_005913701.1 glutathione synthase -
  CIW72_RS06540 (CIW72_06540) pilG 1421632..1422033 (+) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  CIW72_RS06545 (CIW72_06545) - 1422051..1422413 (+) 363 WP_005913708.1 response regulator -
  CIW72_RS06550 (CIW72_06550) - 1422413..1422943 (+) 531 WP_003482487.1 chemotaxis protein CheW -
  CIW72_RS06555 (CIW72_06555) - 1422983..1425019 (+) 2037 WP_003482481.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=245022 CIW72_RS06540 WP_005913706.1 1421632..1422033(+) (pilG) [Xanthomonas citri pv. malvacearum strain MS14003]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=245022 CIW72_RS06540 WP_005913706.1 1421632..1422033(+) (pilG) [Xanthomonas citri pv. malvacearum strain MS14003]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGATGACTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTGATCATGTTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTACTGAGCGCGATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment