Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CA696_RS16425 Genome accession   NZ_CP023142
Coordinates   3148856..3149485 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CFSAN061770     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143856..3154485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA696_RS16410 (CA696_016410) helD 3144098..3146152 (-) 2055 WP_001305911.1 DNA helicase IV -
  CA696_RS16415 (CA696_016415) yccF 3146275..3146721 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CA696_RS16420 (CA696_016420) yccS 3146731..3148893 (+) 2163 WP_000875041.1 YccS family putative transporter -
  CA696_RS16425 (CA696_016425) sxy/tfoX 3148856..3149485 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CA696_RS16430 (CA696_016430) sulA 3149704..3150213 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CA696_RS16440 (CA696_016440) ompA 3150569..3151609 (+) 1041 WP_001309394.1 porin OmpA -
  CA696_RS16445 (CA696_016445) matP 3151685..3152137 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CA696_RS16450 (CA696_016450) ycbZ 3152323..3154083 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=244956 CA696_RS16425 WP_000839153.1 3148856..3149485(-) (sxy/tfoX) [Escherichia coli strain CFSAN061770]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=244956 CA696_RS16425 WP_000839153.1 3148856..3149485(-) (sxy/tfoX) [Escherichia coli strain CFSAN061770]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment