Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C9E35_RS18840 Genome accession   NZ_CP028698
Coordinates   3547425..3548054 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542425..3553054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E35_RS18825 (C9E35_19600) helD 3542667..3544721 (-) 2055 WP_001301436.1 DNA helicase IV -
  C9E35_RS18830 (C9E35_19605) yccF 3544844..3545290 (+) 447 WP_001261230.1 YccF domain-containing protein -
  C9E35_RS18835 (C9E35_19610) yccS 3545300..3547462 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C9E35_RS18840 (C9E35_19615) sxy/tfoX 3547425..3548054 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C9E35_RS18845 (C9E35_19620) sulA 3548273..3548782 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C9E35_RS18850 (C9E35_19630) ompA 3549139..3550179 (+) 1041 WP_000750416.1 porin OmpA -
  C9E35_RS18855 (C9E35_19635) matP 3550255..3550707 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C9E35_RS18860 (C9E35_19640) ycbZ 3550893..3552653 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=244953 C9E35_RS18840 WP_000839159.1 3547425..3548054(-) (sxy/tfoX) [Escherichia coli strain 106]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=244953 C9E35_RS18840 WP_000839159.1 3547425..3548054(-) (sxy/tfoX) [Escherichia coli strain 106]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995