Detailed information NTG0244927

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C9E35_RS05630
• Genome accession: NZ_CP028698
• Coordinates: 1132693..1133685 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 106
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1127693..1138685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9E35_RS05600 (C9E35_05930)	ispD	1127754..1128464 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C9E35_RS05605 (C9E35_05935)	ispF	1128464..1128943 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C9E35_RS05610 (C9E35_05940)	truD	1128940..1129989 (+)	1050	WP_070081079.1	tRNA pseudouridine(13) synthase TruD	-
C9E35_RS05615 (C9E35_05945)	surE	1129970..1130731 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C9E35_RS05620 (C9E35_05950)	pcm	1130725..1131351 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C9E35_RS05625 (C9E35_05955)	nlpD	1131536..1132630 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
C9E35_RS05630 (C9E35_05960)	rpoS	1132693..1133685 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C9E35_RS05635 (C9E35_05965)	-	1133805..1134212 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
C9E35_RS05640 (C9E35_05970)	-	1134359..1134952 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C9E35_RS05645 (C9E35_05975)	-	1134952..1136379 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C9E35_RS05650 (C9E35_05980)	-	1136390..1136626 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C9E35_RS05655 (C9E35_05985)	pphB	1136667..1137323 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=244927 C9E35_RS05630 WP_000081550.1 1132693..1133685(+) (rpoS) [Escherichia coli strain 106]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=244927 C9E35_RS05630 WP_000081550.1 1132693..1133685(+) (rpoS) [Escherichia coli strain 106]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715