Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   SYC_RS05065 Genome accession   NC_006576
Coordinates   1069226..1070161 (+) Length   311 a.a.
NCBI ID   WP_011243265.1    Uniprot ID   Q31QR8
Organism   Synechococcus elongatus PCC 6301     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064226..1075161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS05035 (syc0949_c) - 1064437..1065267 (-) 831 WP_011243261.1 DUF3598 family protein -
  SYC_RS05040 - 1065346..1065582 (+) 237 WP_011377629.1 hypothetical protein -
  SYC_RS05050 (syc0950_d) - 1065745..1066185 (+) 441 WP_011377628.1 VOC family protein -
  SYC_RS05055 (syc0951_d) - 1066182..1067555 (+) 1374 WP_011243263.1 MFS transporter -
  SYC_RS05060 (syc0952_d) - 1067658..1069001 (+) 1344 WP_011243264.1 trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C -
  SYC_RS05065 (syc0953_d) rpoS 1069226..1070161 (+) 936 WP_011243265.1 RpoD/SigA family RNA polymerase sigma factor Regulator
  SYC_RS05070 (syc0954_d) - 1070192..1071508 (+) 1317 WP_011243266.1 cytosine deaminase -
  SYC_RS05075 (syc0955_d) - 1071511..1072860 (+) 1350 WP_011243267.1 FAD-binding oxidoreductase -
  SYC_RS05080 (syc0956_c) - 1072862..1073632 (-) 771 WP_011243268.1 HAD family hydrolase -
  SYC_RS05085 (syc0957_c) - 1073629..1074291 (-) 663 WP_011243269.1 FHA domain-containing protein -
  SYC_RS05090 (syc0958_c) - 1074392..1075105 (-) 714 WP_011243270.1 DevA family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35587.81 Da        Isoelectric Point: 8.3029

>NTDB_id=24492 SYC_RS05065 WP_011243265.1 1069226..1070161(+) (rpoS) [Synechococcus elongatus PCC 6301]
MNVQERRNLNAAVERHTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKMLK
ANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKIS
RIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQ
HEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLRVLSQQPLCPEAC

Nucleotide


Download         Length: 936 bp        

>NTDB_id=24492 SYC_RS05065 WP_011243265.1 1069226..1070161(+) (rpoS) [Synechococcus elongatus PCC 6301]
ATGAACGTACAGGAACGCCGAAACCTGAACGCAGCGGTTGAGCGACACACCAGTGATCATGTCAGCTGGTATCTCAGTTC
AATCGGTAGAATTCCGCTCCTCACTGCCGAGGAAGAGGTTGAACTCTCACGCAAGGTTCAACTGATGATGGCATTGTTGG
AAAACCCAGATGCCGAGAGCAATTCAGAGAACCAAGCGGTCTTACAGGCCGGTCAAAGAGCGAAAACAAAAATGCTCAAA
GCCAACCTCCGGTTGGTTGTGAGTGTTGCGAAGAAATACCAGAATCAAGGCCTAGAACTACTCGACTTGATCCAAGAAGG
GTCACTTGGTTTAGAGCGAGCAGTTGAAAAATTTGACCCAGCCTTGGGTTATAAATTCTCGACCTACGCTTACTGGTGGA
TTCGCCAAAGCATGACTCGGGCGATCGACAATCATGCCCGCACGATTCGTCTTCCCATTCATGTCAGCGAGAAAATTAGC
CGCATCAAAAAAATGACGCGAGAGCTGACTCATCAGCTCAAGCGATTGCCCAGCCGTGCCGAAATCGCTGAGGCGTTAAA
GTTGCCGCTTCAAGATGTAGAAATGCTGCTCAGCCAATCGACCCCCTGCACCAGCTTGGATGCCCAAGCACGGGGCGACG
ATGGCCGCAGCTTCTTGGGAGACTTGATTCCGGATCCCAAGAGTCTAGAGCCGATGGACGCCATGGATCGCCACATCCAG
CACGAGCAAATCTCGACTTGGTTGGCACACCTGACCGAACGTGAGCAGCAGGTCTTGCAACTGCGCTTTGGTCTCCACGA
CGGCGAGCAACACACCTTGGCGGAAATTGGTCGGCGGCTGAATGTGTCCCGCGAACGGATTCGTCAAGTTGAAGCTCGGG
CACTGCAAAAACTGCGGGTCTTGAGTCAACAACCGCTTTGCCCAGAGGCTTGCTAG

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(247-299)

Sigma-70 region 3 (Sigma70_r3)

(157-234)

Sigma-70 region 2 (Sigma70_r2)

(79-147)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(19-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31QR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.497

94.534

0.392

Multiple sequence alignment