Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | CK824_RS10680 | Genome accession | NZ_CP023140 |
| Coordinates | 2241606..2241986 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain XH906 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2236606..2246986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CK824_RS10650 (CK824_10620) | tadA | 2236724..2237227 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| CK824_RS10655 (CK824_10625) | - | 2237234..2238358 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CK824_RS10660 (CK824_10630) | ung | 2238355..2239068 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| CK824_RS10665 (CK824_10635) | - | 2239119..2239715 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| CK824_RS10670 (CK824_10640) | gspK | 2239946..2240905 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| CK824_RS10675 (CK824_10645) | xcpW | 2240905..2241606 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| CK824_RS10680 (CK824_10650) | xcpV | 2241606..2241986 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| CK824_RS10685 (CK824_10655) | - | 2241976..2242530 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| CK824_RS10690 (CK824_10660) | - | 2242540..2243148 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| CK824_RS10695 (CK824_10665) | - | 2243186..2243959 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| CK824_RS10700 (CK824_10670) | - | 2243977..2244318 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| CK824_RS10705 (CK824_10675) | - | 2244330..2245310 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| CK824_RS10710 (CK824_10680) | kdsB | 2245322..2246083 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=244890 CK824_RS10680 WP_000836911.1 2241606..2241986(-) (xcpV) [Acinetobacter baumannii strain XH906]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=244890 CK824_RS10680 WP_000836911.1 2241606..2241986(-) (xcpV) [Acinetobacter baumannii strain XH906]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |