Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   CK824_RS01620 Genome accession   NZ_CP023140
Coordinates   341138..341956 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH906     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336138..346956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK824_RS01585 - 336721..336850 (-) 130 Protein_299 hypothetical protein -
  CK824_RS01590 (CK824_01585) rpoZ 336889..337167 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  CK824_RS01595 (CK824_01590) gmk 337240..337869 (-) 630 WP_000015937.1 guanylate kinase -
  CK824_RS01600 (CK824_01595) ispH 337992..338942 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CK824_RS01605 (CK824_01600) fimU 339112..339585 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CK824_RS01610 (CK824_01605) pilV 339579..340139 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  CK824_RS01615 (CK824_01610) pilW 340140..341141 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  CK824_RS01620 (CK824_01615) pilX 341138..341956 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CK824_RS01625 (CK824_01620) pilY1 341968..345822 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  CK824_RS01630 (CK824_01625) pilY2 345835..346317 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  CK824_RS01635 (CK824_01630) pilE 346314..346739 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=244877 CK824_RS01620 WP_000149374.1 341138..341956(+) (pilX) [Acinetobacter baumannii strain XH906]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=244877 CK824_RS01620 WP_000149374.1 341138..341956(+) (pilX) [Acinetobacter baumannii strain XH906]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment