Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CJ017_RS07575 Genome accession   NZ_CP023076
Coordinates   1576465..1576911 (-) Length   148 a.a.
NCBI ID   WP_072324131.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain XNO62     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571465..1581911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ017_RS07545 (CJ017_07520) gcvPA 1572392..1573738 (-) 1347 WP_031787255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CJ017_RS07550 (CJ017_07525) gcvT 1573757..1574848 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  CJ017_RS07555 (CJ017_07530) - 1575005..1575529 (-) 525 WP_031787256.1 shikimate kinase -
  CJ017_RS07560 (CJ017_07535) - 1575516..1575665 (-) 150 WP_072324192.1 hypothetical protein -
  CJ017_RS07565 (CJ017_07540) comGF 1575764..1576219 (-) 456 WP_078097699.1 competence type IV pilus minor pilin ComGF Machinery gene
  CJ017_RS07570 (CJ017_07545) comGE 1576179..1576478 (-) 300 WP_031787259.1 hypothetical protein Machinery gene
  CJ017_RS07575 (CJ017_07550) comGD 1576465..1576911 (-) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  CJ017_RS07580 (CJ017_07555) comGC 1576889..1577200 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  CJ017_RS07585 (CJ017_07560) comGB 1577215..1578285 (-) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  CJ017_RS07590 (CJ017_07565) comGA 1578257..1579231 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  CJ017_RS07595 (CJ017_07570) - 1579283..1579906 (-) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  CJ017_RS07600 (CJ017_07575) - 1579903..1580232 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  CJ017_RS07605 (CJ017_07580) - 1580232..1581218 (-) 987 WP_000161316.1 ROK family glucokinase -
  CJ017_RS07610 (CJ017_07585) - 1581218..1581418 (-) 201 WP_000087563.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17319.54 Da        Isoelectric Point: 10.2250

>NTDB_id=244832 CJ017_RS07575 WP_072324131.1 1576465..1576911(-) (comGD) [Staphylococcus argenteus strain XNO62]
MEKLLQIRKQQAFTLIEMVVVMMIVSCFLLLSMTSNSLKDFKVINDESNIISLITELNYIKSKAIANQSFINVRFYENSD
TIKVVEKNKIYYLKLKVGKIINVAKVDSIYFDKHGNINKFGSISIEKNNKVYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=244832 CJ017_RS07575 WP_072324131.1 1576465..1576911(-) (comGD) [Staphylococcus argenteus strain XNO62]
ATGGAGAAGCTATTGCAAATTAGAAAACAACAAGCATTTACACTTATTGAAATGGTTGTTGTAATGATGATTGTTAGTTG
TTTTCTTCTATTGAGTATGACATCAAATAGTTTAAAAGATTTCAAAGTTATCAATGATGAATCGAATATCATTTCATTAA
TTACTGAACTGAATTATATTAAATCAAAGGCAATTGCTAATCAAAGTTTTATTAATGTAAGATTTTATGAAAATAGTGAC
ACAATTAAAGTAGTTGAGAAAAATAAGATCTATTATTTAAAGTTAAAAGTTGGAAAAATAATTAATGTTGCGAAAGTGGA
TTCGATTTATTTTGATAAACATGGAAACATTAATAAGTTTGGTAGCATTTCGATTGAAAAAAACAACAAGGTTTATAGAA
TAATATTTCATATTGAAAAAGGAAGAATTCGTTATGAAAAATTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

78.378

100

0.784
  comGD Staphylococcus aureus N315

78.378

100

0.784

Multiple sequence alignment