Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   SYC_RS02740 Genome accession   NC_006576
Coordinates   592390..595176 (+) Length   928 a.a.
NCBI ID   WP_011242844.1    Uniprot ID   A0A0H3K6E9
Organism   Synechococcus elongatus PCC 6301     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 587390..600176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS02715 (syc0528_c) - 587593..588228 (-) 636 WP_011242840.1 hypothetical protein -
  SYC_RS02720 (syc0529_d) - 588347..589108 (+) 762 WP_011242841.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SYC_RS02730 (syc0530_d) - 589370..589852 (+) 483 WP_011242842.1 chemotaxis protein CheW -
  SYC_RS02735 (syc0531_d) - 589868..592387 (+) 2520 WP_011242843.1 methyl-accepting chemotaxis protein -
  SYC_RS02740 (syc0532_d) pilL-C 592390..595176 (+) 2787 WP_011242844.1 hybrid sensor histidine kinase/response regulator Machinery gene
  SYC_RS02745 - 595180..595416 (+) 237 WP_011377830.1 hypothetical protein -
  SYC_RS02755 (syc0533_d) - 596063..596836 (+) 774 WP_011242845.1 response regulator transcription factor -
  SYC_RS02760 (syc0534_d) - 596849..598090 (+) 1242 WP_011242846.1 sensor histidine kinase -
  SYC_RS02765 (syc0535_d) - 598105..598836 (+) 732 WP_011242847.1 pseudouridine synthase -
  SYC_RS13350 (syc0536_d) - 599043..599456 (+) 414 WP_162010018.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 928 a.a.        Molecular weight: 102831.26 Da        Isoelectric Point: 4.4910

>NTDB_id=24483 SYC_RS02740 WP_011242844.1 592390..595176(+) (pilL-C) [Synechococcus elongatus PCC 6301]
MSSTSDNVLRSLFLRETRENLQLLTQMIGQMEAGLPDAKTFADASRAAHSLKGGAALLKFETFRQLAAGLETCLSLLSEA
ELPDYEVSLPLFQRAAALLITATDRIEAGVEEQAVVPEEGNPLIEQLQVLQEMLQAAVQVPPDQSAVTSTLEDLLTQDFE
TVLLPPTPDLEQTLDQLLGDLEETPSPIAGQGSDGDRPALEDLNFDLEDWIEASEEESETVEIDIVAQVKALEAAIADLT
QHPHEQPLSLGIKDDILSAVIQAAPRLPVALTLEPVAKARTQDNGKTPVVFEQTLRVPVRQLDNLSNLVGEIVVSRNTLE
SDQSHLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGSSTAAGSAGASTFPTEQFDDLELDRFSGFHSI
SQEMMELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGARLEIEG
KDILIDKMILQKLQAPMTHLINNALSHGIETAEIRQYRNKSAEGTLVVRASLQGNRTLITVTDDGAGIDAEQVKLKALAR
GLITPEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLALSITKA
LTCLHERARLALPMDSVEEMLDIPQQRLAMDPQGQLRLDWHNLSLPVFPLSSLLDFHLPFGRSRYYNSLGDDGVVSIVVL
RNDNEYLAVQTDQIEGEREIVIKQIEGPIAKPLEILGITVRSDGQVMPIVDVLELFDIAYGRVRQRQVAPVAPSAGETRT
NTEPMVLIVDDSITVRELLSMTFKKAGYVVEQARNGQEALKKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRSLP
VAMLTSRGADRHRQIAAHLGARAYFTKPYLKEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2787 bp        

>NTDB_id=24483 SYC_RS02740 WP_011242844.1 592390..595176(+) (pilL-C) [Synechococcus elongatus PCC 6301]
ATGTCGTCCACCAGTGATAACGTTTTGCGATCGCTGTTTCTACGAGAAACGCGTGAAAATCTCCAGCTGCTGACCCAGAT
GATTGGCCAGATGGAAGCTGGGCTGCCGGATGCAAAAACCTTTGCAGACGCTTCGCGGGCCGCGCATTCGCTCAAGGGTG
GAGCCGCCCTGCTCAAGTTCGAAACCTTCCGGCAACTGGCAGCTGGACTCGAGACTTGCCTGTCTCTGCTATCTGAAGCC
GAGTTGCCCGACTACGAGGTGAGTCTCCCGCTGTTTCAACGGGCCGCCGCGCTGCTGATTACGGCGACCGATCGCATTGA
AGCGGGCGTTGAAGAGCAGGCTGTGGTGCCCGAGGAAGGGAACCCCCTGATTGAACAGCTCCAGGTTTTGCAGGAGATGC
TGCAGGCAGCTGTGCAAGTGCCACCGGATCAATCCGCCGTTACCAGCACGCTCGAAGACTTGCTGACCCAAGATTTTGAG
ACAGTCTTGCTGCCGCCGACTCCTGATTTGGAGCAGACCCTCGATCAGCTCCTGGGCGACCTCGAGGAAACTCCCAGCCC
GATCGCTGGCCAGGGAAGCGACGGCGATCGCCCAGCTTTAGAGGACCTCAACTTTGACCTCGAGGACTGGATTGAGGCCA
GCGAAGAAGAGTCTGAGACGGTCGAAATCGACATTGTGGCCCAGGTCAAAGCCCTGGAAGCTGCGATCGCTGACTTGACG
CAGCACCCCCACGAGCAGCCCCTCAGCTTGGGCATCAAGGACGACATTCTGAGTGCGGTCATCCAAGCCGCTCCCCGTCT
GCCGGTGGCCCTGACGCTAGAGCCAGTGGCTAAGGCCCGTACCCAGGACAATGGCAAAACCCCCGTTGTCTTTGAACAGA
CTCTGCGGGTGCCGGTGCGTCAGTTGGATAACCTCAGCAACCTAGTCGGGGAGATTGTCGTCAGCCGGAATACCCTCGAA
AGCGATCAGTCCCACCTACGGGAAACCCTCGAAAACCTGATGCTACAGGTGCACCAGCTGGGTGATTTGGGTGAGCGGAT
GCGGGAGCTCTACGAGCGATCGCTTCTGGAAACTGCCCTCGCTGCACGTCGCCAACTAGTTGGTAGTTCTACAGCCGCTG
GCTCTGCCGGAGCTTCGACCTTTCCCACCGAGCAATTCGACGACCTCGAACTCGATCGCTTTAGTGGTTTCCATTCCATT
TCTCAAGAAATGATGGAATTGCTAGTCCGTCTGCGCGAGGCAGCCTCGGACATTGACTTCATGGTCAATGAACCCTTTGA
CCAACTGACCCGCAACTTCCAGCAAATTACCCTGCAGTTGCAAAGCGAGTTGAACCAGACTCGAATGGTCCCCTTCTCGG
ACCTGACGGATCAACTGCCACGGGCTGTCCGCGAAATCTCACGGCGCTGTGGCAAGGGTGCCCGTCTGGAGATCGAAGGG
AAAGACATCTTGATTGACAAGATGATCCTGCAGAAACTGCAGGCGCCCATGACTCACCTGATCAACAACGCCCTCAGTCA
TGGCATTGAAACGGCAGAAATTCGCCAATACCGCAATAAATCAGCGGAGGGAACCCTGGTCGTTCGTGCCTCACTCCAGG
GCAATCGGACCCTAATCACTGTTACCGATGATGGGGCCGGGATCGATGCTGAGCAGGTCAAGCTCAAAGCTTTGGCACGG
GGTTTGATCACCCCAGAAGAAGCCGCAGGGATGCGGGTGCGGGAGATCTATGAACTCCTGTTCCGACCCGGCTTCAGTAC
CCGAGATCAGGCCGATGAATTGGCGGGCCGCGGGGTGGGGCTAGATGTGGTTCGCCGGGCGCTCCATGAAATTCAGGGCG
AGATCGTGGTGGATTCGGAGCTGGGGAAAGGGACAACCTTTACCTTCCGCTTGCCCCTCGCTCTCTCGATTACCAAGGCT
TTGACCTGCCTCCACGAACGGGCGCGTTTGGCCCTCCCGATGGATAGCGTTGAGGAAATGCTGGATATTCCCCAGCAGCG
CCTCGCGATGGATCCCCAGGGGCAGTTGCGCCTGGATTGGCACAATTTGTCGCTCCCCGTCTTCCCGCTCTCATCCCTCC
TCGACTTCCATCTGCCGTTTGGGCGATCGCGCTATTACAACAGTCTGGGCGATGACGGTGTCGTCTCGATTGTCGTTCTG
CGTAATGACAACGAGTACCTCGCCGTTCAGACCGATCAGATTGAAGGGGAACGGGAAATTGTGATCAAGCAGATCGAAGG
TCCGATCGCCAAACCCCTCGAGATCTTGGGCATCACCGTCCGCTCTGACGGTCAGGTCATGCCGATCGTGGACGTCTTGG
AACTGTTTGATATTGCCTACGGCCGCGTCCGTCAGCGTCAAGTAGCCCCCGTAGCCCCCAGTGCTGGCGAGACGAGAACC
AATACAGAACCGATGGTGCTGATCGTCGATGACTCGATCACGGTGCGTGAGCTGCTGTCGATGACCTTCAAAAAGGCGGG
CTATGTGGTGGAACAAGCGCGCAACGGCCAAGAAGCCCTAAAGAAGCTCTATTCGGGTCTGCCCTGCGATTTGGTTTTCT
GCGATATCGAAATGCCGAAGATGAATGGGCTAGAGCTCTTAGAGCGGCTTCAGGCTGATCCCAAGCTGCGGAGTTTACCG
GTGGCGATGCTGACATCGCGAGGCGCTGATCGCCATCGTCAAATTGCTGCCCACTTGGGCGCTCGGGCTTACTTCACAAA
ACCCTATCTAAAAGAGCAGCTGTTGGAAGCCTCGGCTCGCTTGAGAAATGGCGAACGACTCATTTAA

Domains

Predicted by InterProScan.

Hpt domain (Hpt)

(9-94)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(496-634)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(293-367)

Response regulator receiver domain (Response_reg)

(806-917)

CheW-like domain (CheW)

(641-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3K6E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

54.962

70.582

0.388

Multiple sequence alignment