Detailed information NTG0244806

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CK238_RS18755
• Genome accession: NZ_CP023075
• Coordinates: 3683776..3684921 (+)
• Length: 381 a.a.
• NCBI ID: WP_079891436.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain K26
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3678776..3689921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK238_RS18735 (CK238_18735)	fnr	3679250..3679966 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
CK238_RS18740 (CK238_18740)	narK	3680064..3681254 (-)	1191	WP_017418712.1	nitrate transporter NarK	-
CK238_RS18745 (CK238_18745)	argS	3681389..3683059 (-)	1671	WP_025649385.1	arginine--tRNA ligase	-
CK238_RS18750 (CK238_18750)	-	3683056..3683484 (-)	429	WP_014419128.1	DUF1934 family protein	-
CK238_RS18755 (CK238_18755)	rapF	3683776..3684921 (+)	1146	WP_079891436.1	Rap family tetratricopeptide repeat protein	Regulator
CK238_RS18760	-	3684905..3685024 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
CK238_RS18765 (CK238_18760)	speB	3685147..3686019 (-)	873	WP_003151054.1	agmatinase	-
CK238_RS18770 (CK238_18765)	speE	3686079..3686909 (-)	831	WP_017418706.1	spermidine synthase	-
CK238_RS18775 (CK238_18770)	-	3687109..3689181 (+)	2073	WP_017418705.1	transglycosylase domain-containing protein	-
CK238_RS18780 (CK238_18775)	-	3689206..3689637 (-)	432	WP_017418704.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=244806 CK238_RS18755 WP_079891436.1 3683776..3684921(+) (rapF) [Bacillus velezensis strain K26]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=244806 CK238_RS18755 WP_079891436.1 3683776..3684921(+) (rapF) [Bacillus velezensis strain K26]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533