Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CK238_RS13635 Genome accession   NZ_CP023075
Coordinates   2715939..2716691 (-) Length   250 a.a.
NCBI ID   WP_063636761.1    Uniprot ID   A0A7W4LWP0
Organism   Bacillus velezensis strain K26     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2710939..2721691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS13610 (CK238_13625) mreC 2711375..2712238 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  CK238_RS13615 (CK238_13630) mreB 2712269..2713282 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CK238_RS13620 (CK238_13635) radC 2713374..2714069 (-) 696 WP_007408165.1 DNA repair protein RadC -
  CK238_RS13625 (CK238_13640) - 2714101..2714670 (-) 570 WP_012118105.1 Maf family protein -
  CK238_RS13630 (CK238_13645) - 2714811..2715812 (-) 1002 WP_063636760.1 SPOR domain-containing protein -
  CK238_RS13635 (CK238_13650) comC 2715939..2716691 (-) 753 WP_063636761.1 A24 family peptidase Machinery gene
  CK238_RS13640 (CK238_13655) - 2716832..2718124 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CK238_RS13645 (CK238_13660) - 2718183..2720825 (-) 2643 WP_017418286.1 valine--tRNA ligase -
  CK238_RS13650 (CK238_13665) - 2721278..2721469 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27160.87 Da        Isoelectric Point: 9.2521

>NTDB_id=244788 CK238_RS13635 WP_063636761.1 2715939..2716691(-) (comC) [Bacillus velezensis strain K26]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=244788 CK238_RS13635 WP_063636761.1 2715939..2716691(-) (comC) [Bacillus velezensis strain K26]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4LWP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572

Multiple sequence alignment