Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CK238_RS04425 Genome accession   NZ_CP023075
Coordinates   853748..854539 (+) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus velezensis strain K26     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 848748..859539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS04400 (CK238_04385) - 850742..851626 (+) 885 WP_017419144.1 PhzF family phenazine biosynthesis isomerase -
  CK238_RS04405 (CK238_04390) - 851703..852287 (+) 585 WP_017419145.1 nitroreductase -
  CK238_RS04410 (CK238_04395) - 852327..852518 (-) 192 WP_003155508.1 YfhD family protein -
  CK238_RS04415 (CK238_04400) - 852589..852699 (-) 111 WP_003155504.1 YfhE family protein -
  CK238_RS04420 (CK238_04405) - 852757..853656 (-) 900 WP_063636898.1 TIGR01777 family oxidoreductase -
  CK238_RS04425 (CK238_04410) recX 853748..854539 (+) 792 WP_003155502.1 recombination regulator RecX Regulator
  CK238_RS04430 (CK238_04415) - 854546..854860 (+) 315 WP_063636897.1 YfhH family protein -
  CK238_RS04435 (CK238_04420) - 855005..856198 (+) 1194 WP_029973982.1 MFS transporter -
  CK238_RS04440 (CK238_04425) - 856238..856627 (-) 390 WP_014417236.1 DUF2606 family protein -
  CK238_RS04445 (CK238_04430) - 856590..857501 (-) 912 WP_025650228.1 serine protease -
  CK238_RS04450 (CK238_04435) - 857646..857798 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  CK238_RS04455 (CK238_04440) - 857922..858191 (+) 270 WP_003155492.1 YfhJ family protein -
  CK238_RS04460 (CK238_04445) - 858323..858850 (+) 528 WP_017419151.1 SH3 domain-containing protein -
  CK238_RS04465 (CK238_04450) - 858936..859271 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=244746 CK238_RS04425 WP_003155502.1 853748..854539(+) (recX) [Bacillus velezensis strain K26]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=244746 CK238_RS04425 WP_003155502.1 853748..854539(+) (recX) [Bacillus velezensis strain K26]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment