Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   CK238_RS01820 Genome accession   NZ_CP023075
Coordinates   336927..337325 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain K26     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 331927..342325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS01795 (CK238_01785) - 332099..333301 (+) 1203 WP_014416870.1 GTP-binding protein -
  CK238_RS01800 (CK238_01790) - 333366..334502 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  CK238_RS01805 (CK238_01795) - 334517..334951 (+) 435 WP_014416871.1 RDD family protein -
  CK238_RS01810 (CK238_01800) - 335023..335346 (+) 324 WP_007409357.1 YckD family protein -
  CK238_RS01815 (CK238_01805) - 335450..336886 (+) 1437 WP_063636907.1 family 1 glycosylhydrolase -
  CK238_RS01820 (CK238_01810) nin/comJ 336927..337325 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  CK238_RS01825 (CK238_01815) nucA/comI 337346..337783 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CK238_RS01830 (CK238_01820) hxlB 338114..338671 (-) 558 WP_025650327.1 6-phospho-3-hexuloisomerase -
  CK238_RS01835 (CK238_01825) hxlA 338668..339303 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  CK238_RS01840 (CK238_01830) - 339535..339897 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=244740 CK238_RS01820 WP_007609299.1 336927..337325(-) (nin/comJ) [Bacillus velezensis strain K26]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=244740 CK238_RS01820 WP_007609299.1 336927..337325(-) (nin/comJ) [Bacillus velezensis strain K26]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment