Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CK496_RS11910 Genome accession   NZ_CP023074
Coordinates   2524047..2525420 (-) Length   457 a.a.
NCBI ID   WP_067484585.1    Uniprot ID   A0AA91PQJ2
Organism   Enterococcus thailandicus strain a523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2519047..2530420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK496_RS11895 (CK496_11895) epsC 2520406..2520942 (-) 537 WP_067484593.1 serine O-acetyltransferase EpsC -
  CK496_RS11900 (CK496_11900) gltX 2521230..2522690 (-) 1461 WP_095803865.1 glutamate--tRNA ligase -
  CK496_RS11905 (CK496_11905) - 2522866..2524017 (-) 1152 WP_067484588.1 PIN/TRAM domain-containing protein -
  CK496_RS11910 (CK496_11910) radA 2524047..2525420 (-) 1374 WP_067484585.1 DNA repair protein RadA Machinery gene
  CK496_RS11915 (CK496_11915) - 2525461..2525994 (-) 534 WP_075491448.1 dUTP diphosphatase -
  CK496_RS11920 (CK496_11920) proB 2526234..2527034 (+) 801 WP_067484580.1 glutamate 5-kinase -
  CK496_RS11925 (CK496_11925) - 2527092..2528339 (+) 1248 WP_086270514.1 glutamate-5-semialdehyde dehydrogenase -
  CK496_RS11930 (CK496_11930) - 2528456..2528800 (+) 345 WP_067484577.1 hypothetical protein -
  CK496_RS11935 (CK496_11935) - 2529091..2529564 (-) 474 WP_095803866.1 hypothetical protein -
  CK496_RS11940 (CK496_11940) - 2529561..2530010 (-) 450 WP_095803867.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49971.63 Da        Isoelectric Point: 7.7232

>NTDB_id=244732 CK496_RS11910 WP_067484585.1 2524047..2525420(-) (radA) [Enterococcus thailandicus strain a523]
MAKKSKTQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTSDRRVRTSLTGERAKPTKIDEVVPKKEPRVQTKLTELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLYVSGEESAEQIKLRAERLGNIDTEFYLYAETDMNEISH
AIEQLKPDYVIIDSIQTMTQPDITSAAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMREHGLEEVSNPSQIFLEERLDGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGGWKAPVGIEVIGVATLSETLKKVFQA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=244732 CK496_RS11910 WP_067484585.1 2524047..2525420(-) (radA) [Enterococcus thailandicus strain a523]
ATGGCAAAAAAATCAAAGACACAATTTGTTTGTCAAAATTGTGGTTATGTGTCGCCTAAATTTTTGGGACGTTGCCCAAA
TTGTGGAAAATGGAATACGATGGTCGAAGAGATTGAACAAGATACAAGTGATCGTCGAGTACGCACCAGTTTAACTGGTG
AACGAGCAAAGCCTACCAAAATCGACGAAGTAGTCCCTAAAAAAGAGCCTCGTGTACAAACAAAGTTAACAGAGTTAAAC
CGTGTACTTGGGGGTGGGGTAGTTCCAGGCTCAATGGTATTGATTGGTGGAGATCCGGGGATTGGGAAGTCAACGTTGCT
TTTACAGGTATCTCAGCAATTAGCAGCTATTGGGGGAAAAGTTTTATATGTTTCTGGTGAAGAAAGTGCGGAACAAATTA
AGCTTCGTGCGGAACGATTAGGAAACATCGATACCGAGTTTTATTTATATGCTGAAACAGATATGAATGAAATTAGTCAT
GCAATTGAACAGCTGAAACCAGACTATGTTATTATCGACTCGATTCAAACAATGACTCAACCAGATATTACAAGTGCGGC
TGGTAGTGTTAGCCAGGTAAGGGAAACAACTGCTGAATTGTTGAAAATTGCGAAGACTAATGGTATTGCTATTTTTATTG
TTGGACATGTTACTAAAGAAGGCTCGATTGCGGGGCCAAGAATGTTGGAGCATATGGTGGATACTGTTTTGTATTTTGAA
GGAGAAAAGCATCACAGTTTCCGAATTTTACGTGCGGTGAAAAATCGTTTTGGTTCAACGAATGAGATTGGTATTTTTGA
AATGCGTGAACATGGACTAGAAGAAGTATCTAATCCTTCTCAAATCTTTTTGGAAGAACGTTTAGATGGCGCAACTGGCT
CAGCAATTGTTGTTGCAATGGAAGGTACTCGTCCAATTTTAGTAGAAATCCAAGCTTTAGTTACACCAACTATGTTTGGA
AATGCGAAACGCACGACTACAGGTCTAGATTTTAATCGTGTTTCTTTGATTATGGCAGTTTTGGAAAAACGAGCAGGATT
GCTGTTACAAAATCAAGATGCTTACTTAAAAGCGGCTGGTGGAGTAAAATTAAATGAACCAGCAATTGATTTAGCGATTG
CGGTAAGTATTGCATCAAGTTATAAAGAAAAAGGAACACAACCAACGGAATGTTTTATTGGCGAAATTGGGCTTACTGGT
GAGATCCGACGTGTGAGTCATATTGAACAACGTGTCAAAGAGGTTCAAAAATTAGGATTTACGAAAGTCTATTTGCCAAA
AAATAATCTAGGTGGGTGGAAGGCTCCTGTGGGTATTGAAGTTATTGGAGTCGCAACATTAAGCGAAACGCTTAAAAAAG
TATTTCAAGCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

74.066

99.562

0.737
  radA Streptococcus pneumoniae Rx1

74.066

99.562

0.737
  radA Streptococcus pneumoniae D39

74.066

99.562

0.737
  radA Streptococcus pneumoniae R6

74.066

99.562

0.737
  radA Streptococcus pneumoniae TIGR4

74.066

99.562

0.737
  radA Streptococcus mitis NCTC 12261

74.066

99.562

0.737
  radA Bacillus subtilis subsp. subtilis str. 168

67.849

98.687

0.67

Multiple sequence alignment