Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CK496_RS11025 Genome accession   NZ_CP023074
Coordinates   2344342..2346153 (-) Length   603 a.a.
NCBI ID   WP_067483016.1    Uniprot ID   A0A179ESG8
Organism   Enterococcus thailandicus strain a523     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339342..2351153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK496_RS11000 (CK496_11000) - 2340258..2341157 (-) 900 WP_095803832.1 RluA family pseudouridine synthase -
  CK496_RS11005 (CK496_11005) - 2341159..2341956 (-) 798 WP_067483007.1 NAD kinase -
  CK496_RS11010 (CK496_11010) - 2341953..2342639 (-) 687 WP_067483009.1 GTP pyrophosphokinase family protein -
  CK496_RS11015 (CK496_11015) - 2342772..2343347 (+) 576 WP_067483012.1 CYTH domain-containing protein -
  CK496_RS11020 (CK496_11020) - 2343466..2344143 (+) 678 WP_067483014.1 ClpXP adapter SpxH family protein -
  CK496_RS11025 (CK496_11025) pepF 2344342..2346153 (-) 1812 WP_067483016.1 oligoendopeptidase F Regulator
  CK496_RS11030 (CK496_11030) - 2346263..2347279 (-) 1017 WP_067483118.1 competence protein CoiA family protein -
  CK496_RS11035 (CK496_11035) - 2347397..2348053 (-) 657 WP_067483018.1 adaptor protein MecA -
  CK496_RS11040 (CK496_11040) spxA 2348345..2348743 (-) 399 WP_067483021.1 transcriptional regulator SpxA -
  CK496_RS11045 (CK496_11045) - 2349510..2350217 (+) 708 WP_067483023.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69100.33 Da        Isoelectric Point: 4.5793

>NTDB_id=244723 CK496_RS11025 WP_067483016.1 2344342..2346153(-) (pepF) [Enterococcus thailandicus strain a523]
MSETTQLPNREELSENLTWDLTKIFANDQEFDEKYQELSEELTQAEKYKGTLANGATAFLNALEFVLDVYRKIEVLYVYA
HLKNDQDTANTTYQALHSRAGSLMAKVGESVSWLEPEVLQLSDETIWSYFEEEPKLEIYRHFVQQMVDNRAHVLSADQEA
LLAGAGEIFGASSSTFSVLNNADLVFPTITGENGEKIQLSHGVYGQLLESTDRSVREAAFKGLYEVYEQFRNTFASTLSA
HIKGYNFKAKARHYHSAREASLSNNHVPESVYDTLVEVVNKHLPLLHRYMELRKRLLNVEELHMYDLYTPVLGEAPIKFS
YEDARAKAIEALQPMGEEYMAVVEEAFADRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHDTLDQLFTLVHEMGHSVHS
FFTRSNQPYVYGDYSIFLAEIASTTNENILTEYLLETETDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMYVEDAKGV
PLTSEYLSESYGKLNAKYYGPAVEEDPEIKYEWSRIPHFYYNYYVFQYATGFSAASALAKKIWAKEPDALGNYLAYLKAG
NSDYPVEVMKKAGVDMTQAAYIEDAMAMFEKRLDELEALIDEL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=244723 CK496_RS11025 WP_067483016.1 2344342..2346153(-) (pepF) [Enterococcus thailandicus strain a523]
ATGAGTGAAACAACCCAATTACCGAATCGCGAAGAACTATCTGAAAATTTAACTTGGGATTTGACGAAAATTTTTGCAAA
TGATCAAGAATTTGACGAAAAATATCAAGAACTATCTGAGGAACTGACACAGGCAGAAAAGTATAAGGGAACGCTAGCTA
ACGGCGCAACCGCATTTTTGAATGCGCTTGAGTTTGTTTTAGATGTTTATCGTAAAATTGAAGTGTTGTACGTTTACGCT
CATTTGAAGAATGATCAAGATACTGCAAACACGACATATCAAGCTTTGCATTCACGTGCGGGTAGCTTAATGGCAAAAGT
GGGTGAATCAGTTTCTTGGTTGGAACCAGAAGTTCTCCAATTATCAGATGAAACGATTTGGAGTTACTTTGAAGAAGAGC
CAAAATTAGAAATCTATCGCCATTTTGTTCAGCAAATGGTAGATAATCGTGCGCACGTCTTATCGGCTGATCAAGAAGCA
CTTTTAGCTGGTGCTGGAGAAATTTTTGGTGCATCAAGTAGTACATTTTCCGTATTGAATAATGCTGATTTAGTTTTTCC
AACTATCACAGGAGAAAATGGCGAAAAAATCCAACTTTCTCATGGGGTCTATGGTCAGTTGTTAGAAAGTACAGACCGTT
CTGTACGTGAAGCGGCATTTAAAGGACTATATGAAGTATATGAACAATTTAGAAATACTTTTGCTTCGACTTTGAGTGCA
CACATCAAAGGGTACAATTTTAAAGCGAAAGCACGTCATTATCATTCTGCTCGTGAAGCTTCTTTAAGCAACAACCATGT
GCCTGAAAGTGTGTATGATACATTGGTTGAAGTAGTGAATAAGCATTTGCCATTATTACATCGTTATATGGAATTGCGTA
AACGTTTATTAAATGTTGAAGAACTACACATGTATGATTTGTATACTCCGGTATTAGGGGAAGCGCCAATCAAGTTTTCT
TATGAGGATGCAAGAGCAAAAGCCATAGAAGCTTTACAGCCAATGGGTGAAGAGTACATGGCAGTTGTTGAAGAAGCATT
TGCTGATCGTTGGATCGATGTTGTTGAAAACAAAGGAAAACGCAGCGGAGCGTATTCTTCAGGAAGCTATGATACGAAAC
CATACATTTTGTTGAATTGGCATGATACATTAGATCAATTATTTACCTTAGTTCATGAAATGGGGCATAGCGTGCATAGT
TTCTTTACTCGTTCAAACCAACCTTATGTTTATGGAGATTATTCAATTTTCTTGGCAGAGATTGCTTCGACAACAAATGA
AAATATTTTGACTGAGTATTTGTTGGAAACAGAAACAGACCCTCGTGTGCGTGCATACGTGTTAAATCATTATTTGGATG
GTTTCAAAGGAACAATTTTCCGTCAAACACAATTTGCTGAATTTGAACATTTTATGTATGTTGAAGACGCAAAAGGTGTG
CCATTAACAAGTGAATATTTAAGTGAAAGTTATGGAAAATTAAATGCAAAATATTACGGACCAGCAGTAGAAGAAGATCC
AGAAATCAAATATGAATGGTCACGGATTCCACATTTCTATTATAATTACTATGTTTTCCAATATGCGACAGGATTTTCTG
CAGCGTCTGCATTAGCGAAGAAGATTTGGGCGAAAGAACCAGATGCGTTAGGTAACTATCTAGCTTATTTGAAAGCAGGA
AACAGCGATTATCCAGTGGAAGTAATGAAAAAAGCGGGTGTTGATATGACGCAAGCAGCTTATATTGAAGATGCAATGGC
GATGTTTGAAAAACGTTTGGATGAATTAGAAGCATTGATTGATGAGTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179ESG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.199

98.507

0.524

Multiple sequence alignment