Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CK496_RS08750 Genome accession   NZ_CP023074
Coordinates   1863379..1865067 (-) Length   562 a.a.
NCBI ID   WP_067480529.1    Uniprot ID   A0AA91SYC3
Organism   Enterococcus thailandicus strain a523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858379..1870067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK496_RS08725 (CK496_08725) ftsL 1860512..1860904 (-) 393 WP_067480541.1 cell division protein FtsL -
  CK496_RS08730 (CK496_08730) rsmH 1860909..1861871 (-) 963 WP_067480538.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  CK496_RS08735 (CK496_08735) mraZ 1861891..1862322 (-) 432 WP_067481326.1 division/cell wall cluster transcriptional repressor MraZ -
  CK496_RS08740 (CK496_08740) - 1862489..1862857 (-) 369 WP_067480535.1 DUF3397 domain-containing protein -
  CK496_RS08745 (CK496_08745) - 1863210..1863326 (+) 117 WP_067480532.1 DUF4044 domain-containing protein -
  CK496_RS08750 (CK496_08750) recN 1863379..1865067 (-) 1689 WP_067480529.1 DNA repair protein RecN Machinery gene
  CK496_RS08755 (CK496_08755) argR 1865084..1865533 (-) 450 WP_067480526.1 arginine repressor -
  CK496_RS08760 (CK496_08760) - 1865615..1866433 (-) 819 WP_071868208.1 TlyA family RNA methyltransferase -
  CK496_RS08765 (CK496_08765) - 1866442..1867332 (-) 891 WP_071868207.1 polyprenyl synthetase family protein -
  CK496_RS08770 (CK496_08770) - 1867332..1867556 (-) 225 WP_095803750.1 exodeoxyribonuclease VII small subunit -
  CK496_RS08775 (CK496_08775) xseA 1867560..1868900 (-) 1341 WP_067480513.1 exodeoxyribonuclease VII large subunit -
  CK496_RS08780 (CK496_08780) - 1868901..1869755 (-) 855 WP_095803751.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63456.04 Da        Isoelectric Point: 4.6804

>NTDB_id=244715 CK496_RS08750 WP_067480529.1 1863379..1865067(-) (recN) [Enterococcus thailandicus strain a523]
MLQEISITNFAIIPELQLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFELPKQPGFSDLM
EELGIESDEDNLIVRRDMALTGKNICRVNGHIVTLANLRRIGAFLVDIQGQNEHQELLQPESHLILLDRFGDTAFQQKKK
MYQKLYGHYRTLEAKVRKVQQNEKSFVQRMDMLHFQQEEIAAAKLQLGEEERLVEERDKLSNYQKIVDSLNAGYGALDNG
EQSSVDGIGRAVSEMQGIAHLDPEYEAIFENIQNAYYLLQDAVGDMSRQIDHLELDDNRLEEVNQRLEVIRQLKRKYGES
IEAILTYYEDITKELGDSDFSEGQLEKMKKELEEKATELHQQAMILREQRQKIAKELETSILQELKGLYMENTEFEVRFA
KQETTFDQNGFDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKIA
QISKYSQVLCITHLPQVAAVADYQYYIVKDVVAGRTQTSVSELAEPQRIEEIARMLAGSEITPLTIEHAKELLKMAKKNH
NK

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=244715 CK496_RS08750 WP_067480529.1 1863379..1865067(-) (recN) [Enterococcus thailandicus strain a523]
GTGTTACAAGAAATTAGTATTACCAACTTTGCGATTATTCCCGAGTTGCAATTGTCTTTTCACGAAGGGATGACGGCACT
AACTGGCGAAACTGGAGCTGGGAAATCAATCATCATTGATGCTTTGGGATTGCTAGCAGGTGGTCGCGGCTCAAGTGATT
ATATTCGTCAAGGTGCAGATAAGTGTATTCTTGAAGGTCTTTTTGAGTTGCCTAAACAGCCGGGATTTTCTGATTTAATG
GAAGAATTAGGAATTGAATCAGATGAAGATAACCTAATCGTTCGACGAGATATGGCTTTGACAGGTAAAAATATTTGTCG
CGTCAATGGACACATTGTGACTTTGGCAAATTTACGACGAATTGGCGCTTTTTTAGTTGATATTCAAGGACAAAATGAAC
ATCAAGAACTATTACAGCCTGAATCACATTTAATCTTACTAGATCGATTCGGTGATACAGCCTTCCAACAGAAGAAAAAA
ATGTATCAAAAATTATACGGACATTATCGAACGTTAGAAGCTAAAGTGCGAAAAGTTCAGCAAAATGAGAAGTCTTTTGT
TCAGCGTATGGATATGCTTCATTTTCAGCAAGAAGAGATTGCGGCTGCGAAGCTTCAACTAGGTGAAGAAGAACGATTAG
TTGAGGAACGCGATAAATTAAGTAATTATCAGAAAATCGTGGATAGCTTGAATGCTGGATATGGCGCGCTGGATAATGGT
GAGCAGAGTAGCGTGGATGGAATTGGACGAGCGGTTTCAGAAATGCAGGGGATTGCACATTTAGATCCAGAGTATGAAGC
GATTTTTGAGAACATTCAAAATGCGTACTACTTGTTACAAGATGCAGTTGGAGATATGAGTCGTCAAATTGATCATTTGG
AACTTGATGATAATCGCTTGGAAGAGGTAAATCAGCGATTAGAAGTAATCCGTCAATTGAAACGAAAATATGGCGAGTCA
ATTGAAGCAATCTTAACTTACTATGAGGATATCACCAAAGAGTTAGGTGACTCTGATTTTTCTGAGGGTCAGTTAGAGAA
AATGAAAAAAGAACTCGAAGAAAAGGCAACAGAACTTCATCAGCAAGCGATGATTTTGCGTGAGCAACGACAAAAAATTG
CTAAGGAACTTGAGACGTCAATTTTACAAGAACTAAAAGGGTTGTACATGGAAAATACAGAGTTTGAAGTTCGTTTTGCT
AAACAAGAAACAACCTTTGACCAAAATGGATTTGACCAAGTTGAATTTTACATAACGACAAATCCTGGTGAACCATTAAA
ACCTTTAGTGAAAGTTGCTTCTGGAGGAGAATTATCGCGAATGTTATTAGCGTTAAAAACGATTTTTTCTTCGGAACAAG
GCGTGACAAGTATTATTTTTGATGAGGTAGATACTGGGGTAAGCGGTCGAGTGGCGCAAGCAATCGCAGACAAAATTGCG
CAGATTTCAAAATATTCTCAAGTTTTGTGTATCACGCATCTTCCGCAAGTTGCAGCGGTTGCTGATTACCAATACTATAT
TGTGAAAGATGTTGTTGCAGGTCGAACACAAACTTCAGTTTCAGAACTTGCTGAACCACAAAGAATTGAAGAAATTGCTC
GGATGCTAGCTGGAAGTGAAATTACGCCATTGACGATTGAGCATGCCAAAGAGTTATTGAAAATGGCAAAAAAAAATCAT
AATAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.493

Multiple sequence alignment