Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C9E38_RS05880 Genome accession   NZ_CP028690
Coordinates   1180571..1181086 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 109     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175571..1186086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E38_RS05835 (C9E38_06165) csrA 1176388..1176573 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C9E38_RS05865 (C9E38_06195) yqaB 1177801..1178367 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C9E38_RS05870 (C9E38_06200) yqaA 1178364..1178792 (+) 429 WP_001287450.1 YqaA family protein -
  C9E38_RS05875 (C9E38_06205) gshA 1178865..1180421 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  C9E38_RS05880 (C9E38_06210) luxS 1180571..1181086 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  C9E38_RS05885 (C9E38_06215) emrB 1181150..1182688 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C9E38_RS05890 (C9E38_06220) emrA 1182705..1183877 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C9E38_RS05895 (C9E38_06225) emrR 1184004..1184534 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C9E38_RS05900 (C9E38_06230) ygaH 1184625..1184960 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  C9E38_RS05905 (C9E38_06235) ygaZ 1184950..1185687 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=244695 C9E38_RS05880 WP_001130215.1 1180571..1181086(+) (luxS) [Escherichia coli strain 109]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=244695 C9E38_RS05880 WP_001130215.1 1180571..1181086(+) (luxS) [Escherichia coli strain 109]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725