Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | FORC69_RS17655 | Genome accession | NZ_CP023061 |
| Coordinates | 3308076..3308705 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain FORC_069 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3296998..3334391 | 3308076..3308705 | within | 0 |
Gene organization within MGE regions
Location: 3296998..3334391
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC69_RS17595 (FORC69_3439) | - | 3296998..3298017 (+) | 1020 | WP_001367167.1 | tyrosine-type recombinase/integrase | - |
| FORC69_RS17600 (FORC69_3441) | yccA | 3298425..3299084 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| FORC69_RS17605 (FORC69_3442) | tusE | 3299175..3299504 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| FORC69_RS17610 (FORC69_3443) | yccX | 3299501..3299779 (-) | 279 | WP_000048243.1 | acylphosphatase | - |
| FORC69_RS17615 (FORC69_3444) | rlmI | 3299874..3301064 (+) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| FORC69_RS17620 (FORC69_3445) | hspQ | 3301122..3301439 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| FORC69_RS17625 (FORC69_3446) | yccU | 3301484..3301897 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| FORC69_RS17630 (FORC69_3448) | yccT | 3302070..3302732 (+) | 663 | WP_000847785.1 | DUF2057 family protein | - |
| FORC69_RS17635 (FORC69_3449) | mgsA | 3302828..3303286 (+) | 459 | WP_001386685.1 | methylglyoxal synthase | - |
| FORC69_RS17640 (FORC69_3450) | helD | 3303318..3305372 (-) | 2055 | WP_000420536.1 | DNA helicase IV | - |
| FORC69_RS17645 (FORC69_3451) | yccF | 3305495..3305941 (+) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| FORC69_RS17650 (FORC69_3452) | yccS | 3305951..3308113 (+) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| FORC69_RS17655 (FORC69_3453) | sxy/tfoX | 3308076..3308705 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| FORC69_RS17660 (FORC69_3454) | sulA | 3308924..3309433 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| FORC69_RS17670 (FORC69_3455) | ompA | 3309790..3310830 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| FORC69_RS17675 (FORC69_3456) | matP | 3310906..3311358 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| FORC69_RS17680 (FORC69_3457) | ycbZ | 3311544..3313304 (+) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| FORC69_RS17685 (FORC69_3458) | fabA | 3313373..3313891 (+) | 519 | WP_001386684.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| FORC69_RS17690 (FORC69_3459) | rmf | 3313961..3314128 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| FORC69_RS17695 (FORC69_3460) | pqiC | 3314384..3314947 (-) | 564 | WP_000759123.1 | membrane integrity-associated transporter subunit PqiC | - |
| FORC69_RS17700 (FORC69_3461) | pqiB | 3314944..3316584 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| FORC69_RS17705 (FORC69_3462) | pqiA | 3316589..3317842 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| FORC69_RS17710 (FORC69_3463) | uup | 3317972..3319879 (-) | 1908 | WP_000053089.1 | ABC transporter ATP-binding protein | - |
| FORC69_RS17715 (FORC69_3464) | rlmKL | 3319890..3321998 (-) | 2109 | WP_001086517.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| FORC69_RS17720 (FORC69_3465) | ycbX | 3322242..3323351 (+) | 1110 | WP_000258204.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| FORC69_RS17725 (FORC69_3466) | zapC | 3323348..3323890 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| FORC69_RS17730 (FORC69_3467) | pyrD | 3324064..3325074 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| FORC69_RS17735 (FORC69_3468) | ycbF | 3325185..3325922 (-) | 738 | WP_001111470.1 | fimbrial chaperone | - |
| FORC69_RS17740 (FORC69_3469) | ycbV | 3325888..3326403 (-) | 516 | WP_000919489.1 | fimbrial protein | - |
| FORC69_RS17745 (FORC69_3470) | ycbU | 3326411..3326953 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| FORC69_RS17750 (FORC69_3471) | elfG | 3326965..3328035 (-) | 1071 | WP_001165657.1 | fimbrial protein | - |
| FORC69_RS17755 (FORC69_3472) | - | 3328026..3330074 (-) | 2049 | Protein_3274 | fimbrial biogenesis usher protein | - |
| FORC69_RS17760 (FORC69_3473) | - | 3330327..3330857 (-) | 531 | WP_000077538.1 | hypothetical protein | - |
| FORC69_RS17765 | - | 3331047..3331295 (+) | 249 | WP_001310454.1 | helix-turn-helix domain-containing protein | - |
| FORC69_RS17770 (FORC69_3474) | - | 3331297..3333387 (+) | 2091 | WP_000289277.1 | Mu transposase C-terminal domain-containing protein | - |
| FORC69_RS17775 (FORC69_3475) | - | 3333459..3334391 (+) | 933 | WP_000129797.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=244668 FORC69_RS17655 WP_000839153.1 3308076..3308705(-) (sxy/tfoX) [Escherichia coli strain FORC_069]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=244668 FORC69_RS17655 WP_000839153.1 3308076..3308705(-) (sxy/tfoX) [Escherichia coli strain FORC_069]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |