Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | CJD39_RS08730 | Genome accession | NZ_CP023057 |
| Coordinates | 1835757..1836098 (-) | Length | 113 a.a. |
| NCBI ID | WP_111750069.1 | Uniprot ID | - |
| Organism | Glaesserella sp. 15-184 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1830757..1841098
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJD39_RS08705 (CJD39_08640) | dcm | 1830995..1832806 (+) | 1812 | WP_202820554.1 | DNA (cytosine-5-)-methyltransferase | - |
| CJD39_RS08710 (CJD39_08645) | ccmI | 1832859..1833743 (-) | 885 | WP_111750065.1 | c-type cytochrome biogenesis protein CcmI | - |
| CJD39_RS08715 (CJD39_08650) | - | 1833740..1834201 (-) | 462 | WP_111750066.1 | cytochrome c-type biogenesis protein | - |
| CJD39_RS08720 (CJD39_08655) | - | 1834207..1834746 (-) | 540 | WP_111750067.1 | DsbE family thiol:disulfide interchange protein | - |
| CJD39_RS08725 (CJD39_08660) | asd | 1834773..1835669 (-) | 897 | WP_111750068.1 | archaetidylserine decarboxylase | - |
| CJD39_RS08730 (CJD39_08665) | comEA/comE1 | 1835757..1836098 (-) | 342 | WP_111750069.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| CJD39_RS08735 (CJD39_08670) | - | 1836361..1837734 (+) | 1374 | WP_111750070.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| CJD39_RS08740 (CJD39_08675) | - | 1837798..1838211 (+) | 414 | WP_111750071.1 | MliC family protein | - |
| CJD39_RS08745 (CJD39_08680) | waaF | 1838208..1839260 (+) | 1053 | WP_111750072.1 | lipopolysaccharide heptosyltransferase II | - |
| CJD39_RS08750 (CJD39_08685) | rfaC | 1839241..1840203 (+) | 963 | WP_111750073.1 | lipopolysaccharide heptosyltransferase RfaC | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12401.24 Da Isoelectric Point: 9.5409
>NTDB_id=244647 CJD39_RS08730 WP_111750069.1 1835757..1836098(-) (comEA/comE1) [Glaesserella sp. 15-184]
MKKLSQYTFSLLFGLFTVTSFAEQKVQTPTESTPVVTEQVATTKAVNVNVVNINTATSAEIQDKLVGIGAKKAQAIVEYR
EKHGKFVTVEQITEVSGIGKATLEKNRDRIVIE
MKKLSQYTFSLLFGLFTVTSFAEQKVQTPTESTPVVTEQVATTKAVNVNVVNINTATSAEIQDKLVGIGAKKAQAIVEYR
EKHGKFVTVEQITEVSGIGKATLEKNRDRIVIE
Nucleotide
Download Length: 342 bp
>NTDB_id=244647 CJD39_RS08730 WP_111750069.1 1835757..1836098(-) (comEA/comE1) [Glaesserella sp. 15-184]
ATGAAAAAACTTTCTCAATATACATTTAGTTTGTTATTTGGGCTTTTTACCGTGACGTCATTTGCGGAGCAAAAAGTACA
AACCCCAACGGAGTCAACGCCTGTGGTTACAGAACAAGTTGCGACAACCAAAGCCGTCAATGTGAATGTGGTAAATATCA
ACACTGCAACCTCGGCGGAAATTCAGGATAAGCTAGTTGGTATTGGGGCTAAAAAAGCGCAAGCGATTGTGGAATATCGT
GAAAAACATGGAAAATTTGTCACTGTGGAGCAGATTACTGAAGTATCAGGTATAGGTAAAGCGACACTGGAGAAAAATCG
TGATCGCATTGTGATTGAGTAA
ATGAAAAAACTTTCTCAATATACATTTAGTTTGTTATTTGGGCTTTTTACCGTGACGTCATTTGCGGAGCAAAAAGTACA
AACCCCAACGGAGTCAACGCCTGTGGTTACAGAACAAGTTGCGACAACCAAAGCCGTCAATGTGAATGTGGTAAATATCA
ACACTGCAACCTCGGCGGAAATTCAGGATAAGCTAGTTGGTATTGGGGCTAAAAAAGCGCAAGCGATTGTGGAATATCGT
GAAAAACATGGAAAATTTGTCACTGTGGAGCAGATTACTGAAGTATCAGGTATAGGTAAAGCGACACTGGAGAAAAATCG
TGATCGCATTGTGATTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
81.416 |
100 |
0.814 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.522 |
100 |
0.575 |