Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   CK207_RS18700 Genome accession   NZ_CP023055
Coordinates   697296..698399 (-) Length   367 a.a.
NCBI ID   WP_069212120.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB43     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 692296..703399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS18685 (CK207_18685) glpD 692363..693907 (+) 1545 WP_019282224.1 glycerol-3-phosphate dehydrogenase -
  CK207_RS18690 (CK207_18690) - 694051..694716 (+) 666 WP_019282225.1 flagellar brake protein -
  CK207_RS18695 (CK207_18695) luxQ 694734..697280 (-) 2547 WP_069212121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  CK207_RS18700 (CK207_18700) luxP 697296..698399 (-) 1104 WP_069212120.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  CK207_RS18705 (CK207_18705) - 698624..699775 (-) 1152 WP_019282226.1 conjugal transfer protein TraF -
  CK207_RS18710 (CK207_18710) - 699871..700194 (-) 324 WP_013867913.1 GIY-YIG nuclease family protein -
  CK207_RS18715 (CK207_18715) - 700195..700848 (-) 654 WP_019282227.1 YceH family protein -
  CK207_RS18720 (CK207_18720) - 700906..701109 (-) 204 WP_026027876.1 hypothetical protein -
  CK207_RS18725 (CK207_18725) - 701300..701617 (+) 318 WP_010319897.1 DUF496 family protein -
  CK207_RS18730 (CK207_18730) - 701925..702176 (+) 252 WP_010319896.1 YgjV family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41759.36 Da        Isoelectric Point: 6.0624

>NTDB_id=244628 CK207_RS18700 WP_069212120.1 697296..698399(-) (luxP) [Vibrio anguillarum strain VIB43]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLNPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQKNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVA
MAEAIKWDLEGKPVPTVYSGDFELVTKEVSSADIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=244628 CK207_RS18700 WP_069212120.1 697296..698399(-) (luxP) [Vibrio anguillarum strain VIB43]
ATGAGAAAAATCCTGCTCCTTTCATTTGTATTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGCTATTGGCGATATCAAGAGTTTTTAGATCTTAATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGCTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTCTT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGCCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATTATTCTGCAAAAT
ATCACTACGCCAGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTTAGCG
ATGCACGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTG
GTGAGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGATGCCGGTGTTGCT
ATGGCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCTGGTGATTTTGAATTGGTAACCAA
AGAGGTCTCTTCAGCGGATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.712

98.365

0.627

Multiple sequence alignment